Convergent evolution of the genomes of marine mammals
Foote, Andrew D, Liu, Yue, Thomas, Gregg W C, Vinař, Tomáš, Alföldi, Jessica, Deng, Jixin, Dugan, Shannon, van Elk, Cornelis E, Hunter, Margaret E, Joshi, Vandita, Khan, Ziad, Kovar, Christie, Lee, Sandra L, Lindblad-Toh, Kerstin, Mancia, Annalaura, Nielsen, Rasmus, Qin, Xiang, Qu, Jiaxin, Raney, Brian J, Vijay, Nagarjun, Wolf, Jochen B W, Hahn, Matthew W, Muzny, Donna M, Worley, Kim C, Gilbert, M Thomas P, Gibbs, Richard A
Published in Nature genetics (01.03.2015)
Published in Nature genetics (01.03.2015)
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PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance
Yan, Han, Hu, Zhirui, Thomas, Gregg W C, Edwards, Scott V, Sackton, Timothy B, Liu, Jun S
Published in Molecular biology and evolution (01.09.2023)
Published in Molecular biology and evolution (01.09.2023)
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Evolution of salivary glue genes in Drosophila species
Da Lage, Jean-Luc, Thomas, Gregg W C, Bonneau, Magalie, Courtier-Orgogozo, Virginie
Published in BMC ecology and evolution (29.01.2019)
Published in BMC ecology and evolution (29.01.2019)
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Journal Article
Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
Wang, Richard J, Thomas, Gregg W C, Raveendran, Muthuswamy, Harris, R Alan, Doddapaneni, Harshavardhan, Muzny, Donna M, Capitanio, John P, Radivojac, Predrag, Rogers, Jeffrey, Hahn, Matthew W
Published in Genome research (01.06.2020)
Published in Genome research (01.06.2020)
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Journal Article
A fast, reproducible, high-throughput variant calling workflow for population genomics
Mirchandani, Cade D, Shultz, Allison J, Thomas, Gregg W C, Smith, Sara J, Baylis, Mara, Arnold, Brian, Corbett-Detig, Russ, Enbody, Erik, Sackton, Timothy B
Published in Molecular biology and evolution (03.01.2024)
Published in Molecular biology and evolution (03.01.2024)
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Journal Article
Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
Montague, Michael J., Li, Gang, Gandolfi, Barbara, Khan, Razib, Aken, Bronwen L., Searle, Steven M. J., Minx, Patrick, Hillier, LaDeana W., Koboldt, Daniel C., Davis, Brian W., Driscoll, Carlos A., Barr, Christina S., Blackistone, Kevin, Quilez, Javier, Lorente-Galdos, Belen, Marques-Bonet, Tomas, Alkan, Can, Thomas, Gregg W. C., Hahn, Matthew W., Menotti-Raymond, Marilyn, O'Brien, Stephen J., Wilson, Richard K., Lyons, Leslie A., Murphy, William J., Warren, Wesley C.
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
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Journal Article
Reproductive Longevity Predicts Mutation Rates in Primates
Thomas, Gregg W.C., Wang, Richard J., Puri, Arthi, Harris, R. Alan, Raveendran, Muthuswamy, Hughes, Daniel S.T., Murali, Shwetha C., Williams, Lawrence E., Doddapaneni, Harsha, Muzny, Donna M., Gibbs, Richard A., Abee, Christian R., Galinski, Mary R., Worley, Kim C., Rogers, Jeffrey, Radivojac, Predrag, Hahn, Matthew W.
Published in Current biology (08.10.2018)
Published in Current biology (08.10.2018)
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Journal Article
Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits
Sun, Cheng, Huang, Jiaxing, Wang, Yun, Zhao, Xiaomeng, Su, Long, Thomas, Gregg W C, Zhao, Mengya, Zhang, Xingtan, Jungreis, Irwin, Kellis, Manolis, Vicario, Saverio, Sharakhov, Igor V, Bondarenko, Semen M, Hasselmann, Martin, Kim, Chang N, Paten, Benedict, Penso-Dolfin, Luca, Wang, Li, Chang, Yuxiao, Gao, Qiang, Ma, Ling, Ma, Lina, Zhang, Zhang, Zhang, Hongbo, Zhang, Huahao, Ruzzante, Livio, Robertson, Hugh M, Zhu, Yihui, Liu, Yanjie, Yang, Huipeng, Ding, Lele, Wang, Quangui, Ma, Dongna, Xu, Weilin, Liang, Cheng, Itgen, Michael W, Mee, Lauren, Cao, Gang, Zhang, Ze, Sadd, Ben M, Hahn, Matthew W, Schaack, Sarah, Barribeau, Seth M, Williams, Paul H, Waterhouse, Robert M, Mueller, Rachel Lockridge
Published in Molecular biology and evolution (01.02.2021)
Published in Molecular biology and evolution (01.02.2021)
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Journal Article
Tissue-specific expression profiles and positive selection analysis in the tree swallow (Tachycineta bicolor) using a de novo transcriptome assembly
Bentz, Alexandra B., Thomas, Gregg W. C., Rusch, Douglas B., Rosvall, Kimberly A.
Published in Scientific reports (01.11.2019)
Published in Scientific reports (01.11.2019)
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Journal Article
Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host
Palesch, David, Bosinger, Steven E., Tharp, Gregory K., Vanderford, Thomas H., Paiardini, Mirko, Chahroudi, Ann, Johnson, Zachary P., Kirchhoff, Frank, Hahn, Beatrice H., Norgren, Robert B., Patel, Nirav B., Sodora, Donald L., Dawoud, Reem A., Stewart, Caro-Beth, Seepo, Sara M., Harris, R. Alan, Liu, Yue, Raveendran, Muthuswamy, Han, Yi, English, Adam, Thomas, Gregg W. C., Hahn, Matthew W., Pipes, Lenore, Mason, Christopher E., Muzny, Donna M., Gibbs, Richard A., Sauter, Daniel, Worley, Kim, Rogers, Jeffrey, Silvestri, Guido
Published in Nature (London) (04.01.2018)
Published in Nature (London) (04.01.2018)
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Journal Article
Genomics and conservation: Guidance from training to analyses and applications
Schiebelhut, Lauren M., Guillaume, Annie S., Kuhn, Arianna, Schweizer, Rena M., Armstrong, Ellie E., Beaumont, Mark A., Byrne, Margaret, Cosart, Ted, Hand, Brian K., Howard, Leif, Mussmann, Steven M., Narum, Shawn R., Rasteiro, Rita, Rivera‐Colón, Angel G., Saarman, Norah, Sethuraman, Arun, Taylor, Helen R., Thomas, Gregg W. C., Wellenreuther, Maren, Luikart, Gordon
Published in Molecular ecology resources (01.02.2024)
Published in Molecular ecology resources (01.02.2024)
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Journal Article
The Effects of Increasing the Number of Taxa on Inferences of Molecular Convergence
Thomas, Gregg W. C., Hahn, Matthew W., Hahn, Yoonsoo
Published in Genome biology and evolution (01.01.2017)
Published in Genome biology and evolution (01.01.2017)
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Journal Article
The comparative genomics and complex population history of Papio baboons
Rogers, Jeffrey, Raveendran, Muthuswamy, Harris, R Alan, Mailund, Thomas, Leppälä, Kalle, Athanasiadis, Georgios, Schierup, Mikkel Heide, Cheng, Jade, Munch, Kasper, Walker, Jerilyn A, Konkel, Miriam K, Jordan, Vallmer, Steely, Cody J, Beckstrom, Thomas O, Bergey, Christina, Burrell, Andrew, Schrempf, Dominik, Noll, Angela, Kothe, Maximillian, Kopp, Gisela H, Liu, Yue, Murali, Shwetha, Billis, Konstantinos, Martin, Fergal J, Muffato, Matthieu, Cox, Laura, Else, James, Disotell, Todd, Muzny, Donna M, Phillips-Conroy, Jane, Aken, Bronwen, Eichler, Evan E, Marques-Bonet, Tomas, Kosiol, Carolin, Batzer, Mark A, Hahn, Matthew W, Tung, Jenny, Zinner, Dietmar, Roos, Christian, Jolly, Clifford J, Gibbs, Richard A, Worley, Kim C
Published in Science advances (01.01.2019)
Published in Science advances (01.01.2019)
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Journal Article
The Evolution of Widespread Recombination Suppression on the Dwarf Hamster (Phodopus) X Chromosome
Moore, Emily C., Thomas, Gregg W. C., Mortimer, Sebastian, Kopania, Emily E. K., Hunnicutt, Kelsie E., Clare-Salzler, Zachary J., Larson, Erica L., Good, Jeffrey M.
Published in Genome biology and evolution (31.05.2022)
Published in Genome biology and evolution (31.05.2022)
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Journal Article
Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise
Prost, Stefan, Armstrong, Ellie E, Nylander, Johan, Thomas, Gregg W C, Suh, Alexander, Petersen, Bent, Dalen, Love, Benz, Brett W, Blom, Mozes P K, Palkopoulou, Eleftheria, Ericson, Per G P, Irestedt, Martin
Published in Gigascience (01.05.2019)
Published in Gigascience (01.05.2019)
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