Itch-Associated Peptides: RNA-Seq and Bioinformatic Analysis of Natriuretic Precursor Peptide B and Gastrin Releasing Peptide in Dorsal Root and Trigeminal Ganglia, and the Spinal Cord
Goswami, Samridhi C, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Mishra, Santosh, Hoon, Mark A, Mannes, Andrew J, Iadarola, Michael J
Published in Molecular pain (14.08.2014)
Published in Molecular pain (14.08.2014)
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Magic-BLAST, an accurate RNA-seq aligner for long and short reads
Boratyn, Grzegorz M, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Busby, Ben, Madden, Thomas L
Published in BMC bioinformatics (25.07.2019)
Published in BMC bioinformatics (25.07.2019)
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A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome
Davy, Anne, Bello, Paul, Thierry-Mieg, Nicolas, Vaglio, Philippe, Hitti, Joseph, Doucette-Stamm, Lynn, Thierry-Mieg, Danielle, Reboul, Jérôme, Boulton, Simon, Walhout, Albertha J M, Coux, Olivier, Vidal, Marc
Published in EMBO reports (01.09.2001)
Published in EMBO reports (01.09.2001)
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Detecting and correcting systematic variation in large-scale RNA sequencing data
Li, Sheng, Łabaj, Paweł P, Zumbo, Paul, Sykacek, Peter, Shi, Wei, Shi, Leming, Phan, John, Wu, Po-Yen, Wang, May, Wang, Charles, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Kreil, David P, Mason, Christopher E
Published in Nature biotechnology (01.09.2014)
Published in Nature biotechnology (01.09.2014)
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Direct RNA sequencing of astronaut blood reveals spaceflight-associated m6A increases and hematopoietic transcriptional responses
Grigorev, Kirill, Nelson, Theodore M., Overbey, Eliah G., Houerbi, Nadia, Kim, JangKeun, Najjar, Deena, Damle, Namita, Afshin, Evan E., Ryon, Krista A., Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Melnick, Ari M., Mateus, Jaime, Mason, Christopher E.
Published in Nature communications (11.06.2024)
Published in Nature communications (11.06.2024)
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Dynorphin and Enkephalin Opioid Peptides and Transcripts in Spinal Cord and Dorsal Root Ganglion During Peripheral Inflammatory Hyperalgesia and Allodynia
Sapio, Matthew R., Iadarola, Michael J., Loydpierson, Amelia J., Kim, Jenny J., Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Maric, Dragan, Mannes, Andrew J.
Published in The journal of pain (01.09.2020)
Published in The journal of pain (01.09.2020)
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Analysis of Interleukin-21-Induced Prdm1 Gene Regulation Reveals Functional Cooperation of STAT3 and IRF4 Transcription Factors
Kwon, Hyokjoon, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Kim, Hyoung-Pyo, Oh, Jangsuk, Tunyaplin, Chainarong, Carotta, Sebastian, Donovan, Colleen E., Goldman, Matthew L., Tailor, Prafullakumar, Ozato, Keiko, Levy, David E., Nutt, Stephen L., Calame, Kathryn, Leonard, Warren J.
Published in Immunity (Cambridge, Mass.) (18.12.2009)
Published in Immunity (Cambridge, Mass.) (18.12.2009)
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Predictable dynamic program of timing of DNA replication in human cells
Desprat, Romain, Thierry-Mieg, Danielle, Lailler, Nathalie, Lajugie, Julien, Schildkraut, Carl, Thierry-Mieg, Jean, Bouhassira, Eric E
Published in Genome research (01.12.2009)
Published in Genome research (01.12.2009)
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Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction
Tong, Li, Wu, Po-Yen, Phan, John H., Hassazadeh, Hamid R., Tong, Weida, Wang, May D.
Published in Scientific reports (21.10.2020)
Published in Scientific reports (21.10.2020)
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26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans
Han, Ting, Manoharan, Arun Prasad, Harkins, Tim T, Bouffard, Pascal, Fitzpatrick, Colin, Chu, Diana S, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Kim, John K
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (03.11.2009)
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Journal Article
Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)
Peng, Xinxia, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Nishida, Andrew, Pipes, Lenore, Bozinoski, Marjan, Thomas, Matthew J, Kelly, Sara, Weiss, Jeffrey M, Raveendran, Muthuswamy, Muzny, Donna, Gibbs, Richard A, Rogers, Jeffrey, Schroth, Gary P, Katze, Michael G, Mason, Christopher E
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics
Pipes, Lenore, Li, Sheng, Bozinoski, Marjan, Palermo, Robert, Peng, Xinxia, Blood, Phillip, Kelly, Sara, Weiss, Jeffrey M, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Zumbo, Paul, Chen, Ronghua, Schroth, Gary P, Mason, Christopher E, Katze, Michael G
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing
Gong, Binsheng, Li, Dan, Łabaj, Paweł P., Pan, Bohu, Novoradovskaya, Natalia, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Chen, Guangchun, Bergstrom Lucas, Anne, LoCoco, Jennifer S., Richmond, Todd A., Tseng, Elizabeth, Kusko, Rebecca, Happe, Scott, Mercer, Timothy R., Pabón-Peña, Carlos, Salmans, Michael, Tilgner, Hagen U., Xiao, Wenzhong, Johann, Donald J., Jones, Wendell, Tong, Weida, Mason, Christopher E., Kreil, David P., Xu, Joshua
Published in Scientific data (16.08.2024)
Published in Scientific data (16.08.2024)
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Comprehensive Identification and Characterization of Human Secretome Based on Integrative Proteomic and Transcriptomic Data
Chen, Geng, Chen, Jiwei, Liu, Huanlong, Chen, Shuangguan, Zhang, Yang, Li, Peng, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Mattes, William, Ning, Baitang, Shi, Tieliu
Published in Frontiers in cell and developmental biology (21.11.2019)
Published in Frontiers in cell and developmental biology (21.11.2019)
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Using RNA sample titrations to assess microarray platform performance and normalization techniques
Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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A global analysis of Caenorhabditis elegans operons
Blumenthal, Thomas, Evans, Donald, Link, Christopher D, Guffanti, Alessandro, Lawson, Daniel, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Chiu, Wei Lu, Duke, Kyle, Kiraly, Moni, Kim, Stuart K
Published in Nature (London) (20.06.2002)
Published in Nature (London) (20.06.2002)
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Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing
Mane, Shrinivasrao P, Evans, Clive, Cooper, Kristal L, Crasta, Oswald R, Folkerts, Otto, Hutchison, Stephen K, Harkins, Timothy T, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Jensen, Roderick V
Published in BMC genomics (12.06.2009)
Published in BMC genomics (12.06.2009)
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ZYG-9, A Caenorhabditis elegans Protein Required for Microtubule Organization and Function, Is a Component of Meiotic and Mitotic Spindle Poles
Matthews, Lisa R., Carter, Philip, Thierry-Mieg, Danielle, Kemphues, Ken
Published in The Journal of cell biology (01.06.1998)
Published in The Journal of cell biology (01.06.1998)
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Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs
Takeda, Jun-ichi, Suzuki, Yutaka, Nakao, Mitsuteru, Barrero, Roberto A, Koyanagi, Kanako O, Jin, Lihua, Motono, Chie, Hata, Hiroko, Isogai, Takao, Nagai, Keiichi, Otsuki, Tetsuji, Kuryshev, Vladimir, Shionyu, Masafumi, Yura, Kei, Go, Mitiko, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Wiemann, Stefan, Nomura, Nobuo, Sugano, Sumio, Gojobori, Takashi, Imanishi, Tadashi
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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The Caenorhabditis elegans unc-32 Gene Encodes Alternative Forms of a Vacuolar ATPase a Subunit
Pujol, N, Bonnerot, C, Ewbank, J J, Kohara, Y, Thierry-Mieg, D
Published in The Journal of biological chemistry (13.04.2001)
Published in The Journal of biological chemistry (13.04.2001)
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