A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes
Vignal, Alain, Boitard, Simon, Thébault, Noémie, Dayo, Guiguigbaza‐Kossigan, Yapi‐Gnaore, Valentine, Youssao Abdou Karim, Issaka, Berthouly‐Salazar, Cécile, Pálinkás‐Bodzsár, Nóra, Guémené, Daniel, Thibaud‐Nissen, Francoise, Warren, Wesley C., Tixier‐Boichard, Michèle, Rognon, Xavier
Published in Molecular ecology resources (01.07.2019)
Published in Molecular ecology resources (01.07.2019)
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Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Cheng, Chia‐Yi, Krishnakumar, Vivek, Chan, Agnes P., Thibaud‐Nissen, Françoise, Schobel, Seth, Town, Christopher D.
Published in The Plant journal : for cell and molecular biology (01.02.2017)
Published in The Plant journal : for cell and molecular biology (01.02.2017)
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Database resources of the national center for biotechnology information
Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Connor, Ryan, Funk, Kathryn, Kelly, Chris, Kim, Sunghwan, Madej, Tom, Marchler-Bauer, Aron, Lanczycki, Christopher, Lathrop, Stacy, Lu, Zhiyong, Thibaud-Nissen, Francoise, Murphy, Terence, Phan, Lon, Skripchenko, Yuri, Tse, Tony, Wang, Jiyao, Williams, Rebecca, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Database resources of the National Center for Biotechnology Information
Sayers, Eric W, Beck, Jeff, Brister, J Rodney, Bolton, Evan E, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Ketter, Anne, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Kuznetsov, Anatoliy, Lathrop, Stacy, Lu, Zhiyong, McGarvey, Kelly, Madden, Thomas L, Murphy, Terence D, O’Leary, Nuala, Phan, Lon, Schneider, Valerie A, Thibaud-Nissen, Françoise, Trawick, Bart W, Pruitt, Kim D, Ostell, James
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity
Low, Wai Yee, Tearle, Rick, Bickhart, Derek M, Rosen, Benjamin D, Kingan, Sarah B, Swale, Thomas, Thibaud-Nissen, Françoise, Murphy, Terence D, Young, Rachel, Lefevre, Lucas, Hume, David A, Collins, Andrew, Ajmone-Marsan, Paolo, Smith, Timothy P L, Williams, John L
Published in Nature communications (16.01.2019)
Published in Nature communications (16.01.2019)
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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
Morales, Joannella, Pujar, Shashikant, Loveland, Jane E, Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M, Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M, Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S, Kay, Michael, Kodali, Vamsi K, McGarvey, Kelly M, McMahon, Aoife, Mudge, Jonathan M, Murphy, Daniel N, Murphy, Michael R, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R, Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D, Frankish, Adam, Cunningham, Fiona, Murphy, Terence D
Published in Nature (London) (14.04.2022)
Published in Nature (London) (14.04.2022)
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Long-read sequencing and de novo assembly of a Chinese genome
Shi, Lingling, Guo, Yunfei, Dong, Chengliang, Huddleston, John, Yang, Hui, Han, Xiaolu, Fu, Aisi, Li, Quan, Li, Na, Gong, Siyi, Lintner, Katherine E, Ding, Qiong, Wang, Zou, Hu, Jiang, Wang, Depeng, Wang, Feng, Wang, Lin, Lyon, Gholson J, Guan, Yongtao, Shen, Yufeng, Evgrafov, Oleg V, Knowles, James A, Thibaud-Nissen, Francoise, Schneider, Valerie, Yu, Chack-Yung, Zhou, Libing, Eichler, Evan E, So, Kwok-Fai, Wang, Kai
Published in Nature communications (30.06.2016)
Published in Nature communications (30.06.2016)
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Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle
Low, Wai Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M, Rosen, Benjamin D, Kronenberg, Zev N, Kingan, Sarah B, Tseng, Elizabeth, Thibaud-Nissen, Françoise, Martin, Fergal J, Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R, Lee, Joyce, Pang, Andy W C, Heaton, Michael P, Phillippy, Adam M, Hiendleder, Stefan, Smith, Timothy P L, Williams, John L
Published in Nature communications (29.04.2020)
Published in Nature communications (29.04.2020)
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Journal Article
A New Chicken Genome Assembly Provides Insight into Avian Genome Structure
Warren, Wesley C, Hillier, LaDeana W, Tomlinson, Chad, Minx, Patrick, Kremitzki, Milinn, Graves, Tina, Markovic, Chris, Bouk, Nathan, Pruitt, Kim D, Thibaud-Nissen, Francoise, Schneider, Valerie, Mansour, Tamer A, Brown, C Titus, Zimin, Aleksey, Hawken, Rachel, Abrahamsen, Mitch, Pyrkosz, Alexis B, Morisson, Mireille, Fillon, Valerie, Vignal, Alain, Chow, William, Howe, Kerstin, Fulton, Janet E, Miller, Marcia M, Lovell, Peter, Mello, Claudio V, Wirthlin, Morgan, Mason, Andrew S, Kuo, Richard, Burt, David W, Dodgson, Jerry B, Cheng, Hans H
Published in G3 : genes - genomes - genetics (01.01.2017)
Published in G3 : genes - genomes - genetics (01.01.2017)
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Improved reference genome of the arboviral vector Aedes albopictus
Palatini, Umberto, Masri, Reem A, Cosme, Luciano V, Koren, Sergey, Thibaud-Nissen, Françoise, Biedler, James K, Krsticevic, Flavia, Johnston, J Spencer, Halbach, Rebecca, Crawford, Jacob E, Antoshechkin, Igor, Failloux, Anna-Bella, Pischedda, Elisa, Marconcini, Michele, Ghurye, Jay, Rhie, Arang, Sharma, Atashi, Karagodin, Dmitry A, Jenrette, Jeremy, Gamez, Stephanie, Miesen, Pascal, Masterson, Patrick, Caccone, Adalgisa, Sharakhova, Maria V, Tu, Zhijian, Papathanos, Philippos A, Van Rij, Ronald P, Akbari, Omar S, Powell, Jeffrey, Phillippy, Adam M, Bonizzoni, Mariangela
Published in Genome Biology (26.08.2020)
Published in Genome Biology (26.08.2020)
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A chromosome-scale fishing cat reference genome for the evaluation of potential germline risk variants
Carroll, Rachel A, Rice, Edward S, Murphy, William J, Lyons, Leslie A, Thibaud-Nissen, Francoise, Coghill, Lyndon M, Swanson, William F, Terio, Karen A, Boyd, Tyler, Warren, Wesley C
Published in Scientific reports (05.04.2024)
Published in Scientific reports (05.04.2024)
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The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes
Bond, Donna M., Ortega-Recalde, Oscar, Laird, Melanie K., Hayakawa, Takashi, Richardson, Kyle S., Reese, Finlay.C. B., Kyle, Bruce, McIsaac-Williams, Brooke E., Robertson, Bruce C., van Heezik, Yolanda, Adams, Amy L., Chang, Wei-Shan, Haase, Bettina, Mountcastle, Jacquelyn, Driller, Maximilian, Collins, Joanna, Howe, Kerstin, Go, Yasuhiro, Thibaud-Nissen, Francoise, Lister, Nicholas C., Waters, Paul D., Fedrigo, Olivier, Jarvis, Erich D., Gemmell, Neil J., Alexander, Alana, Hore, Timothy A.
Published in Nature communications (17.10.2023)
Published in Nature communications (17.10.2023)
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The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain
Sarsani, Vishal Kumar, Raghupathy, Narayanan, Fiddes, Ian T, Armstrong, Joel, Thibaud-Nissen, Francoise, Zinder, Oraya, Bolisetty, Mohan, Howe, Kerstin, Hinerfeld, Doug, Ruan, Xiaoan, Rowe, Lucy, Barter, Mary, Ananda, Guruprasad, Paten, Benedict, Weinstock, George M, Churchill, Gary A, Wiles, Michael V, Schneider, Valerie A, Srivastava, Anuj, Reinholdt, Laura G
Published in G3 : genes - genomes - genetics (01.06.2019)
Published in G3 : genes - genomes - genetics (01.06.2019)
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Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates
Kong, Wenqian, Liu, Min, Felker, Peter, Ewens, Mauricio, Bessega, Cecilia, Pometti, Carolina, Wang, Jinpeng, Xu, Peng, Teng, Jia, Wang, Jinyu, Wang, Xiyin, Jiao, Yuannian, Alabady, Magdy S., Thibaud‐Nissen, Françoise, Masterson, Patrick, Qiao, Xin, Paterson, Andrew H.
Published in Plants, people, planet (01.11.2023)
Published in Plants, people, planet (01.11.2023)
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Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean
Thibaud-Nissen, F, Shealy, R.T, Khanna, A, Vodkin, L.O
Published in Plant physiology (Bethesda) (01.05.2003)
Published in Plant physiology (Bethesda) (01.05.2003)
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Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean
Lee, Young Ho, Abueg, Linelle, Kim, Jin-Koo, Kim, Young Wook, Fedrigo, Olivier, Balacco, Jennifer, Formenti, Giulio, Howe, Kerstin, Tracey, Alan, Wood, Jonathan, Thibaud-Nissen, Françoise, Nam, Bo Hye, No, Eun Soo, Kim, Hye Ran, Lee, Chul, Jarvis, Erich D, Kim, Heebal
Published in Scientific data (08.12.2023)
Published in Scientific data (08.12.2023)
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Development of Arabidopsis whole‐genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid‐treated plants
Thibaud‐Nissen, Françoise, Wu, Hank, Richmond, Todd, Redman, Julia C., Johnson, Christopher, Green, Roland, Arias, Jonathan, Town, Christopher D.
Published in The Plant journal : for cell and molecular biology (01.07.2006)
Published in The Plant journal : for cell and molecular biology (01.07.2006)
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