Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Cheng, Chia‐Yi, Krishnakumar, Vivek, Chan, Agnes P., Thibaud‐Nissen, Françoise, Schobel, Seth, Town, Christopher D.
Published in The Plant journal : for cell and molecular biology (01.02.2017)
Published in The Plant journal : for cell and molecular biology (01.02.2017)
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Database resources of the National Center for Biotechnology Information
Sayers, Eric W, Beck, Jeff, Brister, J Rodney, Bolton, Evan E, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Ketter, Anne, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Kuznetsov, Anatoliy, Lathrop, Stacy, Lu, Zhiyong, McGarvey, Kelly, Madden, Thomas L, Murphy, Terence D, O’Leary, Nuala, Phan, Lon, Schneider, Valerie A, Thibaud-Nissen, Françoise, Trawick, Bart W, Pruitt, Kim D, Ostell, James
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity
Low, Wai Yee, Tearle, Rick, Bickhart, Derek M, Rosen, Benjamin D, Kingan, Sarah B, Swale, Thomas, Thibaud-Nissen, Françoise, Murphy, Terence D, Young, Rachel, Lefevre, Lucas, Hume, David A, Collins, Andrew, Ajmone-Marsan, Paolo, Smith, Timothy P L, Williams, John L
Published in Nature communications (16.01.2019)
Published in Nature communications (16.01.2019)
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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
Morales, Joannella, Pujar, Shashikant, Loveland, Jane E, Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M, Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M, Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S, Kay, Michael, Kodali, Vamsi K, McGarvey, Kelly M, McMahon, Aoife, Mudge, Jonathan M, Murphy, Daniel N, Murphy, Michael R, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R, Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D, Frankish, Adam, Cunningham, Fiona, Murphy, Terence D
Published in Nature (London) (14.04.2022)
Published in Nature (London) (14.04.2022)
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle
Low, Wai Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M, Rosen, Benjamin D, Kronenberg, Zev N, Kingan, Sarah B, Tseng, Elizabeth, Thibaud-Nissen, Françoise, Martin, Fergal J, Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R, Lee, Joyce, Pang, Andy W C, Heaton, Michael P, Phillippy, Adam M, Hiendleder, Stefan, Smith, Timothy P L, Williams, John L
Published in Nature communications (29.04.2020)
Published in Nature communications (29.04.2020)
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Improved reference genome of the arboviral vector Aedes albopictus
Palatini, Umberto, Masri, Reem A, Cosme, Luciano V, Koren, Sergey, Thibaud-Nissen, Françoise, Biedler, James K, Krsticevic, Flavia, Johnston, J Spencer, Halbach, Rebecca, Crawford, Jacob E, Antoshechkin, Igor, Failloux, Anna-Bella, Pischedda, Elisa, Marconcini, Michele, Ghurye, Jay, Rhie, Arang, Sharma, Atashi, Karagodin, Dmitry A, Jenrette, Jeremy, Gamez, Stephanie, Miesen, Pascal, Masterson, Patrick, Caccone, Adalgisa, Sharakhova, Maria V, Tu, Zhijian, Papathanos, Philippos A, Van Rij, Ronald P, Akbari, Omar S, Powell, Jeffrey, Phillippy, Adam M, Bonizzoni, Mariangela
Published in Genome Biology (26.08.2020)
Published in Genome Biology (26.08.2020)
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Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates
Kong, Wenqian, Liu, Min, Felker, Peter, Ewens, Mauricio, Bessega, Cecilia, Pometti, Carolina, Wang, Jinpeng, Xu, Peng, Teng, Jia, Wang, Jinyu, Wang, Xiyin, Jiao, Yuannian, Alabady, Magdy S., Thibaud‐Nissen, Françoise, Masterson, Patrick, Qiao, Xin, Paterson, Andrew H.
Published in Plants, people, planet (01.11.2023)
Published in Plants, people, planet (01.11.2023)
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Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean
Thibaud-Nissen, F, Shealy, R.T, Khanna, A, Vodkin, L.O
Published in Plant physiology (Bethesda) (01.05.2003)
Published in Plant physiology (Bethesda) (01.05.2003)
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Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean
Lee, Young Ho, Abueg, Linelle, Kim, Jin-Koo, Kim, Young Wook, Fedrigo, Olivier, Balacco, Jennifer, Formenti, Giulio, Howe, Kerstin, Tracey, Alan, Wood, Jonathan, Thibaud-Nissen, Françoise, Nam, Bo Hye, No, Eun Soo, Kim, Hye Ran, Lee, Chul, Jarvis, Erich D, Kim, Heebal
Published in Scientific data (08.12.2023)
Published in Scientific data (08.12.2023)
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Development of Arabidopsis whole‐genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid‐treated plants
Thibaud‐Nissen, Françoise, Wu, Hank, Richmond, Todd, Redman, Julia C., Johnson, Christopher, Green, Roland, Arias, Jonathan, Town, Christopher D.
Published in The Plant journal : for cell and molecular biology (01.07.2006)
Published in The Plant journal : for cell and molecular biology (01.07.2006)
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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
Li, Wenjun, O’Neill, Kathleen R, Haft, Daniel H, DiCuccio, Michael, Chetvernin, Vyacheslav, Badretdin, Azat, Coulouris, George, Chitsaz, Farideh, Derbyshire, Myra K, Durkin, A Scott, Gonzales, Noreen R, Gwadz, Marc, Lanczycki, Christopher J, Song, James S, Thanki, Narmada, Wang, Jiyao, Yamashita, Roxanne A, Yang, Mingzhang, Zheng, Chanjuan, Marchler-Bauer, Aron, Thibaud-Nissen, Françoise
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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RefSeq: an update on prokaryotic genome annotation and curation
Haft, Daniel H, DiCuccio, Michael, Badretdin, Azat, Brover, Vyacheslav, Chetvernin, Vyacheslav, O'Neill, Kathleen, Li, Wenjun, Chitsaz, Farideh, Derbyshire, Myra K, Gonzales, Noreen R, Gwadz, Marc, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zheng, Chanjuan, Thibaud-Nissen, Françoise, Geer, Lewis Y, Marchler-Bauer, Aron, Pruitt, Kim D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Telomere-to-telomere assembly of a complete human X chromosome
Miga, Karen H, Koren, Sergey, Rhie, Arang, Vollger, Mitchell R, Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A, Schneider, Valerie A, Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G, Chang, Alexander M, Hansen, Nancy F, Wilfert, Amy B, Thibaud-Nissen, Françoise, Schmitt, Anthony D, Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y, Soto, Daniela C, Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J, Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa Ana, Graves Lindsay, Tina A, Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C, Pevzner, Pavel A, Gerton, Jennifer L, Sullivan, Beth A, Eichler, Evan E, Phillippy, Adam M
Published in Nature (London) (03.09.2020)
Published in Nature (London) (03.09.2020)
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Assembly: a resource for assembled genomes at NCBI
Kitts, Paul A, Church, Deanna M, Thibaud-Nissen, Françoise, Choi, Jinna, Hem, Vichet, Sapojnikov, Victor, Smith, Robert G, Tatusova, Tatiana, Xiang, Charlie, Zherikov, Andrey, DiCuccio, Michael, Murphy, Terence D, Pruitt, Kim D, Kimchi, Avi
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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The Egyptian Rousette Genome Reveals Unexpected Features of Bat Antiviral Immunity
Pavlovich, Stephanie S., Lovett, Sean P., Koroleva, Galina, Guito, Jonathan C., Arnold, Catherine E., Nagle, Elyse R., Kulcsar, Kirsten, Lee, Albert, Thibaud-Nissen, Françoise, Hume, Adam J., Mühlberger, Elke, Uebelhoer, Luke S., Towner, Jonathan S., Rabadan, Raul, Sanchez-Lockhart, Mariano, Kepler, Thomas B., Palacios, Gustavo
Published in Cell (17.05.2018)
Published in Cell (17.05.2018)
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Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
Formenti, Giulio, Rhie, Arang, Walenz, Brian P, Thibaud-Nissen, Françoise, Shafin, Kishwar, Koren, Sergey, Myers, Eugene W, Jarvis, Erich D, Phillippy, Adam M
Published in Nature methods (01.06.2022)
Published in Nature methods (01.06.2022)
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RefSeq: an update on mammalian reference sequences
Pruitt, Kim D, Brown, Garth R, Hiatt, Susan M, Thibaud-Nissen, Françoise, Astashyn, Alexander, Ermolaeva, Olga, Farrell, Catherine M, Hart, Jennifer, Landrum, Melissa J, McGarvey, Kelly M, Murphy, Michael R, O'Leary, Nuala A, Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Shkeda, Andrei, Sun, Hanzhen, Tamez, Pamela, Tully, Raymond E, Wallin, Craig, Webb, David, Weber, Janet, Wu, Wendy, DiCuccio, Michael, Kitts, Paul, Maglott, Donna R, Murphy, Terence D, Ostell, James M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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