The single-cell eQTLGen consortium
van der Wijst, Mgp, de Vries, D H, Groot, H E, Trynka, G, Hon, C C, Bonder, M J, Stegle, O, Nawijn, M C, Idaghdour, Y, van der Harst, P, Ye, C J, Powell, J, Theis, F J, Mahfouz, A, Heinig, M, Franke, L
Published in eLife (09.03.2020)
Published in eLife (09.03.2020)
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Journal Article
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
Wolf, F Alexander, Hamey, Fiona K, Plass, Mireya, Solana, Jordi, Dahlin, Joakim S, Göttgens, Berthold, Rajewsky, Nikolaus, Simon, Lukas, Theis, Fabian J
Published in Genome Biology (19.03.2019)
Published in Genome Biology (19.03.2019)
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Journal Article
Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease
Meier, Anna B, Zawada, Dorota, De Angelis, Maria Teresa, Martens, Laura D, Santamaria, Gianluca, Zengerle, Sophie, Nowak-Imialek, Monika, Kornherr, Jessica, Zhang, Fangfang, Tian, Qinghai, Wolf, Cordula M, Kupatt, Christian, Sahara, Makoto, Lipp, Peter, Theis, Fabian J, Gagneur, Julien, Goedel, Alexander, Laugwitz, Karl-Ludwig, Dorn, Tatjana, Moretti, Alessandra
Published in Nature biotechnology (01.12.2023)
Published in Nature biotechnology (01.12.2023)
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Journal Article
Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
Moignard, Victoria, Macaulay, Iain C, Swiers, Gemma, Buettner, Florian, Schütte, Judith, Calero-Nieto, Fernando J, Kinston, Sarah, Joshi, Anagha, Hannah, Rebecca, Theis, Fabian J, Jacobsen, Sten Eirik, de Bruijn, Marella F, Göttgens, Berthold
Published in Nature cell biology (01.04.2013)
Published in Nature cell biology (01.04.2013)
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Journal Article
The neglected twin: Nummular eczema is a variant of atopic dermatitis with codominant TH2/TH17 immune response
Böhner, Alexander, Jargosch, Manja, Müller, Nikola S., Garzorz-Stark, Natalie, Pilz, Caroline, Lauffer, Felix, Wang, Rosi, Roenneberg, Sophie, Zink, Alexander, Thomas, Jenny, Theis, Fabian J., Biedermann, Tilo, Eyerich, Stefanie, Eyerich, Kilian
Published in Journal of allergy and clinical immunology (01.08.2023)
Published in Journal of allergy and clinical immunology (01.08.2023)
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Journal Article
Gene Expression–Based Molecular Test as Diagnostic Aid for the Differential Diagnosis of Psoriasis and Eczema in Formalin-Fixed and Paraffin-Embedded Tissue, Microbiopsies, and Tape Strips
Fischer, Felix, Doll, Anais, Uereyener, Deniz, Roenneberg, Sophie, Hillig, Christina, Weber, Lucca, Hackert, Verena, Meinel, Martin, Farnoud, Ali, Seiringer, Peter, Thomas, Jenny, Anand, Philipp, Graner, Larissa, Schlenker, Franziska, Zengerle, Roland, Jonsson, Pontus, Jargosch, Manja, Theis, Fabian J., Schmidt-Weber, Carsten B., Biedermann, Tilo, Howell, Michael, Reich, Kristian, Eyerich, Kilian, Menden, Michael, Garzorz-Stark, Natalie, Lauffer, Felix, Eyerich, Stefanie
Published in Journal of investigative dermatology (01.08.2023)
Published in Journal of investigative dermatology (01.08.2023)
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Journal Article
Ly6D + Siglec-H + precursors contribute to conventional dendritic cells via a Zbtb46 + Ly6D + intermediary stage
Lutz, Konstantin, Musumeci, Andrea, Sie, Christopher, Dursun, Ezgi, Winheim, Elena, Bagnoli, Johannes, Ziegenhain, Christoph, Rausch, Lisa, Bergen, Volker, Luecken, Malte D, Oostendorp, Robert A J, Schraml, Barbara U, Theis, Fabian J, Enard, Wolfgang, Korn, Thomas, Krug, Anne B
Published in Nature communications (16.06.2022)
Published in Nature communications (16.06.2022)
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Journal Article
IL‐17C amplifies epithelial inflammation in human psoriasis and atopic eczema
Lauffer, F., Jargosch, M., Baghin, V., Krause, L., Kempf, W., Absmaier‐Kijak, M., Morelli, M., Madonna, S., Marsais, F., Lepescheux, L., Albanesi, C., Müller, N.S., Theis, F.J., Schmidt‐Weber, C., Eyerich, S., Biedermann, T., Vandeghinste, N., Steidl, S., Eyerich, K.
Published in Journal of the European Academy of Dermatology and Venereology (01.04.2020)
Published in Journal of the European Academy of Dermatology and Venereology (01.04.2020)
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Journal Article
Large-scale modeling of cancer signaling: Mechanistic modeling meets Big Data
Fröhlich, F, Shadrin, A, Kessler, T, Wierling, C, Heinig, M, Theis, F.J, Lange, B, Lehrach, H, Hasenauer, J
Published in European journal of cancer (1990) (01.12.2016)
Published in European journal of cancer (1990) (01.12.2016)
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Journal Article
Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus
Kos, Aron, Lopez, Juan Pablo, Bordes, Joeri, de Donno, Carlo, Dine, Julien, Brivio, Elena, Karamihalev, Stoyo, Luecken, Malte D, Almeida-Correa, Suellen, Gasperoni, Serena, Dick, Alec, Miranda, Lucas, Büttner, Maren, Stoffel, Rainer, Flachskamm, Cornelia, Theis, Fabian J, Schmidt, Mathias V, Chen, Alon
Published in Science advances (01.12.2023)
Published in Science advances (01.12.2023)
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Journal Article
Abstract P1-06-02: A force-sensitive organoid assay to quantify regenerative potential of single primary human mammary cells
Scheel, CH, Linnemann, JR, Miura, H, Meixner, LK, Irmler, M, Kloos, UJ, Hirschi, B, Bartsch, HS, Sass, S, Beckers, J, Theis, FJ, Gabka, C, Sotlar, K
Published in Cancer research (Chicago, Ill.) (15.02.2016)
Published in Cancer research (Chicago, Ill.) (15.02.2016)
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Journal Article
Progressive disruption of hematopoietic architecture from clonal hematopoiesis to MDS
Buck, Michèle C., Bast, Lisa, Hecker, Judith S., Rivière, Jennifer, Rothenberg-Thurley, Maja, Vogel, Luisa, Wang, Dantong, Andrä, Immanuel, Theis, Fabian J., Bassermann, Florian, Metzeler, Klaus H., Oostendorp, Robert A.J., Marr, Carsten, Götze, Katharina S.
Published in iScience (18.08.2023)
Published in iScience (18.08.2023)
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Journal Article
Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine
Webb, Katharine J, Norton, William Hj, Trümbach, Dietrich, Meijer, Annemarie H, Ninkovic, Jovica, Topp, Stefanie, Heck, Daniel, Marr, Carsten, Wurst, Wolfgang, Theis, Fabian J, Spaink, Herman P, Bally-Cuif, Laure
Published in Genome Biology (01.01.2009)
Published in Genome Biology (01.01.2009)
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Journal Article
Oncogenic Kras promotes early pancreatic carcinogenesis by perpetuating elements of natural inflammatory response
Kong, B, Bruns, P, Behler, N, Schlitter, A.M, Friess, H, Erkan, M, Theis, F.J, Esposito, I, Michalski, C.W, Kleeff, J
Published in Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] (01.01.2016)
Published in Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] (01.01.2016)
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Journal Article
Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
Moignard, Victoria, Macaulay, Iain C, Swiers, Gemma, Buettner, Florian, Schutte, Judith, Calero-Nieto, Fernando J, Kinston, Sarah, Joshi, Anagha, Hannah, Rebecca, Theis, Fabian J, Jacobsen, Sten Eirik, de Bruijn, Marella F, Gottgens, Berthold
Published in Nature cell biology (01.05.2013)
Published in Nature cell biology (01.05.2013)
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Journal Article
SEC14-like 3 is decreased in airway ciliated cells in experimental and paediatric asthma
Bartel, S, Schulz, N, Schamberger, AC, Alessandrini, F, Pagel, P, Theis, FJ, Milger, K, Noessner, E, Stick, SM, Kicic, A, Eickelberg, O, Freishtat, RJ, Krauss-Etschmann, S
Published in Pneumologie (08.04.2015)
Published in Pneumologie (08.04.2015)
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Conference Proceeding
Uniqueness of Non-Gaussian Subspace Analysis
Theis, Fabian J., Kawanabe, Motoaki
Published in Independent Component Analysis and Blind Signal Separation (2006)
Published in Independent Component Analysis and Blind Signal Separation (2006)
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Book Chapter
Conference Proceeding