A systematic assessment of current genome-scale metabolic reconstruction tools
Mendoza, Sebastián N, Olivier, Brett G, Molenaar, Douwe, Teusink, Bas
Published in Genome Biology (07.08.2019)
Published in Genome Biology (07.08.2019)
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Journal Article
In vivo characterisation of fluorescent proteins in budding yeast
Botman, Dennis, de Groot, Daan Hugo, Schmidt, Phillipp, Goedhart, Joachim, Teusink, Bas
Published in Scientific reports (19.02.2019)
Published in Scientific reports (19.02.2019)
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Journal Article
Shifts in growth strategies reflect tradeoffs in cellular economics
Molenaar, Douwe, van Berlo, Rogier, de Ridder, Dick, Teusink, Bas
Published in Molecular systems biology (2009)
Published in Molecular systems biology (2009)
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Journal Article
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
Blasche, Sonja, Kim, Yongkyu, Mars, Ruben A. T., Machado, Daniel, Maansson, Maria, Kafkia, Eleni, Milanese, Alessio, Zeller, Georg, Teusink, Bas, Nielsen, Jens, Benes, Vladimir, Neves, Rute, Sauer, Uwe, Patil, Kiran Raosaheb
Published in Nature microbiology (01.02.2021)
Published in Nature microbiology (01.02.2021)
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Journal Article
Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
Elsemman, Ibrahim E., Rodriguez Prado, Angelica, Grigaitis, Pranas, Garcia Albornoz, Manuel, Harman, Victoria, Holman, Stephen W., van Heerden, Johan, Bruggeman, Frank J., Bisschops, Mark M. M., Sonnenschein, Nikolaus, Hubbard, Simon, Beynon, Rob, Daran-Lapujade, Pascale, Nielsen, Jens, Teusink, Bas
Published in Nature communications (10.02.2022)
Published in Nature communications (10.02.2022)
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Journal Article
Bet-hedging during bacterial diauxic shift
Solopova, Ana, van Gestel, Jordi, Weissing, Franz J., Bachmann, Herwig, Teusink, Bas, Kok, Jan, Kuipers, Oscar P.
Published in Proceedings of the National Academy of Sciences - PNAS (20.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (20.05.2014)
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Journal Article
The common message of constraint-based optimization approaches: overflow metabolism is caused by two growth-limiting constraints
de Groot, Daan H., Lischke, Julia, Muolo, Riccardo, Planqué, Robert, Bruggeman, Frank J., Teusink, Bas
Published in Cellular and molecular life sciences : CMLS (01.02.2020)
Published in Cellular and molecular life sciences : CMLS (01.02.2020)
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Journal Article
Availability of public goods shapes the evolution of competing metabolic strategies
Bachmann, Herwig, Fischlechner, Martin, Rabbers, Iraes, Barfa, Nakul, dos Santos, Filipe Branco, Molenaar, Douwe, Teusink, Bas
Published in Proceedings of the National Academy of Sciences - PNAS (27.08.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (27.08.2013)
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Journal Article
Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells
van Heerden, Johan H., Wortel, Meike T., Bruggeman, Frank J., Heijnen, Joseph J., Bollen, Yves J. M., Planqué, Robert, Hulshof, Josephus, O'Toole, Tom G., Wahl, S. Aljoscha, Teusink, Bas
Published in Science (American Association for the Advancement of Science) (28.02.2014)
Published in Science (American Association for the Advancement of Science) (28.02.2014)
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Journal Article
Community flux balance analysis for microbial consortia at balanced growth
Khandelwal, Ruchir A, Olivier, Brett G, Röling, Wilfred F M, Teusink, Bas, Bruggeman, Frank J
Published in PloS one (31.05.2013)
Published in PloS one (31.05.2013)
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Journal Article
Population dynamics of microbial cross-feeding are determined by co-localization probabilities and cooperation-independent cheater growth
van Tatenhove-Pel, Rinke J., de Groot, Daan H., Bisseswar, Anjani S., Teusink, Bas, Bachmann, Herwig
Published in The ISME Journal (01.10.2021)
Published in The ISME Journal (01.10.2021)
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Journal Article
Proteome constraints reveal targets for improving microbial fitness in nutrient‐rich environments
Chen, Yu, van Pelt‐KleinJan, Eunice, van Olst, Berdien, Douwenga, Sieze, Boeren, Sjef, Bachmann, Herwig, Molenaar, Douwe, Nielsen, Jens, Teusink, Bas
Published in Molecular systems biology (01.04.2021)
Published in Molecular systems biology (01.04.2021)
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Journal Article
Microbial competition reduces metabolic interaction distances to the low µm-range
van Tatenhove-Pel, Rinke J., Rijavec, Tomaž, Lapanje, Aleš, van Swam, Iris, Zwering, Emile, Hernandez-Valdes, Jhonatan A., Kuipers, Oscar P., Picioreanu, Cristian, Teusink, Bas, Bachmann, Herwig
Published in The ISME Journal (01.03.2021)
Published in The ISME Journal (01.03.2021)
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Journal Article
Elementary Growth Modes provide a molecular description of cellular self-fabrication
de Groot, Daan H, Hulshof, Josephus, Teusink, Bas, Bruggeman, Frank J, Planqué, Robert
Published in PLoS computational biology (01.01.2020)
Published in PLoS computational biology (01.01.2020)
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Journal Article
Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features
Saulnier, Delphine M, Santos, Filipe, Roos, Stefan, Mistretta, Toni-Ann, Spinler, Jennifer K, Molenaar, Douwe, Teusink, Bas, Versalovic, James
Published in PloS one (29.04.2011)
Published in PloS one (29.04.2011)
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Journal Article
A yeast FRET biosensor enlightens cAMP signalling
Botman, Dennis, O'Toole, Tom G, Goedhart, Joachim, Bruggeman, Frank J, van Heerden, Johan H, Teusink, Bas
Published in Molecular biology of the cell (15.06.2021)
Published in Molecular biology of the cell (15.06.2021)
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Journal Article
Model-based quantification of metabolic interactions from dynamic microbial-community data
Hanemaaijer, Mark, Olivier, Brett G, Röling, Wilfred F M, Bruggeman, Frank J, Teusink, Bas
Published in PloS one (09.03.2017)
Published in PloS one (09.03.2017)
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Journal Article
Maintaining maximal metabolic flux by gene expression control
Planqué, Robert, Hulshof, Josephus, Teusink, Bas, Hendriks, Johannes C, Bruggeman, Frank J
Published in PLoS computational biology (01.09.2018)
Published in PLoS computational biology (01.09.2018)
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Journal Article