QUAST: quality assessment tool for genome assemblies
Gurevich, Alexey, Saveliev, Vladislav, Vyahhi, Nikolay, Tesler, Glenn
Published in Bioinformatics (15.04.2013)
Published in Bioinformatics (15.04.2013)
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How to apply de Bruijn graphs to genome assembly
Compeau, Phillip E C, Pevzner, Pavel A, Tesler, Glenn
Published in Nature biotechnology (01.11.2011)
Published in Nature biotechnology (01.11.2011)
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
Bankevich, Anton, Nurk, Sergey, Antipov, Dmitry, Gurevich, Alexey A, Dvorkin, Mikhail, Kulikov, Alexander S, Lesin, Valery M, Nikolenko, Sergey I, Pham, Son, Prjibelski, Andrey D, Pyshkin, Alexey V, Sirotkin, Alexander V, Vyahhi, Nikolay, Tesler, Glenn, Alekseyev, Max A, Pevzner, Pavel A
Published in Journal of computational biology (01.05.2012)
Published in Journal of computational biology (01.05.2012)
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Human and Mouse Genomic Sequences Reveal Extensive Breakpoint Reuse in Mammalian Evolution
Pevzner, Pavel, Tesler, Glenn
Published in Proceedings of the National Academy of Sciences - PNAS (24.06.2003)
Published in Proceedings of the National Academy of Sciences - PNAS (24.06.2003)
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Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
McLean, Jeffrey S, Lombardo, Mary-Jane, Badger, Jonathan H, Edlund, Anna, Novotny, Mark, Yee-Greenbaum, Joyclyn, Vyahhi, Nikolay, Hall, Adam P, Yang, Youngik, Dupont, Christopher L, Ziegler, Michael G, Chitsaz, Hamidreza, Allen, Andrew E, Yooseph, Shibu, Tesler, Glenn, Pevzner, Pavel A, Friedman, Robert M, Nealson, Kenneth H, Venter, J Craig, Lasken, Roger S
Published in Proceedings of the National Academy of Sciences - PNAS (25.06.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (25.06.2013)
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Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
Lasken, Roger S, Chitsaz, Hamidreza, Yee-Greenbaum, Joyclyn L, Tesler, Glenn, Lombardo, Mary-Jane, Dupont, Christopher L, Badger, Jonathan H, Novotny, Mark, Rusch, Douglas B, Fraser, Louise J, Gormley, Niall A, Schulz-Trieglaff, Ole, Smith, Geoffrey P, Evers, Dirk J, Pevzner, Pavel A
Published in Nature biotechnology (01.10.2011)
Published in Nature biotechnology (01.10.2011)
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Initial sequence and comparative analysis of the cat genome
Pontius, Joan U, Mullikin, James C, Smith, Douglas R, Lindblad-Toh, Kerstin, Gnerre, Sante, Clamp, Michele, Chang, Jean, Stephens, Robert, Neelam, Beena, Volfovsky, Natalia, Schäffer, Alejandro A, Agarwala, Richa, Narfström, Kristina, Murphy, William J, Giger, Urs, Roca, Alfred L, Antunes, Agostinho, Menotti-Raymond, Marilyn, Yuhki, Naoya, Pecon-Slattery, Jill, Johnson, Warren E, Bourque, Guillaume, Tesler, Glenn, O'Brien, Stephen J
Published in Genome Research (01.11.2007)
Published in Genome Research (01.11.2007)
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Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele
Ronen, Roy, Tesler, Glenn, Akbari, Ali, Zakov, Shay, Rosenberg, Noah A, Bafna, Vineet
Published in PLoS genetics (01.09.2015)
Published in PLoS genetics (01.09.2015)
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De novo repeat classification and fragment assembly
Pevzner, Pavel A, Pevzner, Paul A, Tang, Haixu, Tesler, Glenn
Published in Genome research (01.09.2004)
Published in Genome research (01.09.2004)
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Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
McLean, Jeffrey S, Lombardo, Mary-Jane, Ziegler, Michael G, Novotny, Mark, Yee-Greenbaum, Joyclyn, Badger, Jonathan H, Tesler, Glenn, Nurk, Sergey, Lesin, Valery, Brami, Daniel, Hall, Adam P, Edlund, Anna, Allen, Lisa Z, Durkin, Scott, Reed, Sharon, Torriani, Francesca, Nealson, Kenneth H, Pevzner, Pavel A, Friedman, Robert, Venter, J Craig, Lasken, Roger S
Published in Genome research (01.05.2013)
Published in Genome research (01.05.2013)
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Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele
Ronen, Roy, Tesler, Glenn, Akbari, Ali, Zakov, Shay, Rosenberg, Noah A, Bafna, Vineet
Published in PLoS genetics (01.11.2016)
Published in PLoS genetics (01.11.2016)
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Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
Nurk, Sergey, Bankevich, Anton, Antipov, Dmitry, Gurevich, Alexey A, Korobeynikov, Anton, Lapidus, Alla, Prjibelski, Andrey D, Pyshkin, Alexey, Sirotkin, Alexander, Sirotkin, Yakov, Stepanauskas, Ramunas, Clingenpeel, Scott R, Woyke, Tanja, McLean, Jeffrey S, Lasken, Roger, Tesler, Glenn, Alekseyev, Max A, Pevzner, Pavel A
Published in Journal of computational biology (01.10.2013)
Published in Journal of computational biology (01.10.2013)
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