A multi-encoder variational autoencoder controls multiple transformational features in single-cell image analysis
Ternes, Luke, Dane, Mark, Gross, Sean, Labrie, Marilyne, Mills, Gordon, Gray, Joe, Heiser, Laura, Chang, Young Hwan
Published in Communications biology (23.03.2022)
Published in Communications biology (23.03.2022)
Get full text
Journal Article
MYC Deregulation and PTEN Loss Model Tumor and Stromal Heterogeneity of Aggressive Triple-Negative Breast Cancer
Doha, Zinab O., Wang, Xiaoyan, Calistri, Nicholas L., Eng, Jennifer, Daniel, Colin J., Ternes, Luke, Kim, Eun Na, Pelz, Carl, Munks, Michael, Betts, Courtney, Kwon, Sunjong, Bucher, Elmar, Li, Xi, Waugh, Trent, Tatarova, Zuzana, Blumberg, Dylan, Ko, Aaron, Kirchberger, Nell, Pietenpol, Jennifer A., Sanders, Melinda E., Langer, Ellen M., Dai, Mu-Shui, Mills, Gordon, Chin, Koei, Chang, Young Hwan, Coussens, Lisa M., Gray, Joe W., Heiser, Laura M., Sears, Rosalie C.
Published in Nature communications (13.09.2023)
Published in Nature communications (13.09.2023)
Get full text
Journal Article
3D multiplexed tissue imaging reconstruction and optimized region of interest (ROI) selection through deep learning model of channels embedding
Burlingame, Erik, Ternes, Luke, Lin, Jia-Ren, Chen, Yu-An, Kim, Eun Na, Gray, Joe W, Chang, Young Hwan
Published in Frontiers in bioinformatics (19.10.2023)
Published in Frontiers in bioinformatics (19.10.2023)
Get full text
Journal Article
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
Rood, Jennifer E., Coffey, Robert J., Demir, Emek, Ghosh, Sharmistha, Iacobuzio-Donahue, Christine A., Jané-Valbuena, Judit, Mazzilli, Sarah A., Pe’er, Dana, Tan, Kai, Aguilar, Ruben A., Babur, Ozgun, Boland, Genevieve, Bosse, Kristopher, Bott, Matthew, Boyden, Ed, Brooks, James, Cerami, Ethan, Chang, Young Hwan, Chaudhary, Ojasvi, Chen, Alyce A., Chen, Feng, Chun, Jaeyoung, Cisneros, Luis, Contrepois, Kevin, Creason, Allison L., Demir, Emek, Diskin, Sharon, Drewes, Julia, Eng, Jennifer, Erwin, Graham, Flaherty, Keith, Gao, Jianjiong, Gao, Vianne R., Giannakis, Marios, Gowers, Kate, Gray, Joe W., Greenleaf, William, Gresham, Jeremy, Hacohen, Nir, Harris, Kathleen A., Hayashi, Akimasa, Herndon, John M., Huh, Won Jae, Ijaz, Heba, Izar, Benjamin, Johnson, Brett E., Kaestner, Klaus, Kim, Albert H., Kopytra, Mateusz, Kundaje, Anshul, Lau, Ken S., Lee, Hayan, Lenburg, Marc, Lim, Kian-Huat, Lin, Yiyun, Lively, Tracy, Longabaugh, William J.R., Ma, Cynthia X., Marks, Jeffrey, Masilionais, Ignas, McKinley, Eliot T., McMichael, Joshua F., Mosse, Yael, Ness, Reid, Nikolov, Milen, Oberdoerffer, Philipp, Offin, Michael, Olson, Anastasiya, Ossandon, Miguel, Polyak, Kornelia, Reid, Mary, Roy, Sudipta, Ryser, Marc D., Schrag, Deborah, Sears, Rosalie C., Shalek, Alex, Sheng, Jeff, Shoghi, Kooresh I., Sibley, Alexander B., Sorger, Peter K., Southard-Smith, Austin, Srivastava, Sudhir, Storm, Phillip, Sullivan, Ryan, Suvà, Mario, Thorsson, Vésteinn, Tran, Linh, Veis, Deborah J., Vossough, Arastoo, Wagle, Nikhil, Wang, Liang-Bo, West, Robert, Wu, Chi-yun, Wyczalkowski, Matthew A., Xie, Yubin, Yang, Xiaolu, Zhang, Mianlei, Zhang, Yantian, Zhou, Daniel Cui, Zhuang, Xiaowei
Published in Cell (16.04.2020)
Published in Cell (16.04.2020)
Get full text
Journal Article
Suppression of dystroglycan function accompanies pancreatic acinar-to-ductal metaplasia and favours dysplasia development
Huang, Ge, Ternes, Luke, Lanciault, Christian, MacPherson-Hawthorne, Kevin, Chang, Young Hwan, Sears, Rosalie C, Muschler, John L
Published in The Journal of pathology (22.10.2024)
Published in The Journal of pathology (22.10.2024)
Get full text
Journal Article
Abstract PO-014: VISTA: VIsual Semantic Tissue Analysis for pancreatic disease quantification in murine cohorts
Ternes, Luke, Huang, Ge, Lanciault, Christian, Thibault, Guillaume, Riggers, Rachelle, Gray, Joe, Muschler, John, Chang, Young Hwan
Published in Cancer research (Chicago, Ill.) (15.11.2021)
Published in Cancer research (Chicago, Ill.) (15.11.2021)
Get full text
Journal Article
VISTA: VIsual Semantic Tissue Analysis for pancreatic disease quantification in murine cohorts
Ternes, Luke, Huang, Ge, Lanciault, Christian, Thibault, Guillaume, Riggers, Rachelle, Gray, Joe W., Muschler, John, Chang, Young Hwan
Published in Scientific reports (01.12.2020)
Published in Scientific reports (01.12.2020)
Get full text
Journal Article
Abstract 5431: 3D multiplexed tissue imaging reconstruction and optimized region-of-interest (ROI) selection through deep learning model of channels embedding
Burlingame, Erik, Ternes, Luke, Kim, Eun Na, Gray, Joe W., Chang, Young Hwan
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Get full text
Journal Article
Addressing persistent challenges in digital image analysis of cancerous tissues
Prabhakaran, Sandhya, Yapp, Clarence, Baker, Gregory J, Beyer, Johanna, Chang, Young Hwan, Creason, Allison L, Krueger, Robert, Muhlich, Jeremy, Patterson, Nathan Heath, Sidak, Kevin, Sudar, Damir, Taylor, Adam J, Ternes, Luke, Troidl, Jakob, Xie, Yubin, Sokolov, Artem, Tyson, Darren R
Published in bioRxiv : the preprint server for biology (24.07.2023)
Get more information
Published in bioRxiv : the preprint server for biology (24.07.2023)
Journal Article
3D multiplexed tissue imaging reconstruction and optimized region-of-interest (ROI) selection through deep learning model of channels embedding
Burlingame, Erik, Ternes, Luke, Jia-Ren, Lin, Yu-An, Chen, Eun Na Kim, Gray, Joe W, Santagata, Sandro, Sorger, Peter Karl, Chang, Young Hwan
Published in bioRxiv (12.12.2022)
Published in bioRxiv (12.12.2022)
Get full text
Paper