The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity
Sebé-Pedrós, Arnau, Ballaré, Cecilia, Parra-Acero, Helena, Chiva, Cristina, Tena, Juan J., Sabidó, Eduard, Gómez-Skarmeta, José Luis, Di Croce, Luciano, Ruiz-Trillo, Iñaki
Published in Cell (19.05.2016)
Published in Cell (19.05.2016)
Get full text
Journal Article
Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
Pasquali, Lorenzo, Gaulton, Kyle J, Rodríguez-Seguí, Santiago A, Mularoni, Loris, Miguel-Escalada, Irene, Akerman, İldem, Tena, Juan J, Morán, Ignasi, Gómez-Marín, Carlos, van de Bunt, Martijn, Ponsa-Cobas, Joan, Castro, Natalia, Nammo, Takao, Cebola, Inês, García-Hurtado, Javier, Maestro, Miguel Angel, Pattou, François, Piemonti, Lorenzo, Berney, Thierry, Gloyn, Anna L, Ravassard, Philippe, Skarmeta, José Luis Gómez, Müller, Ferenc, McCarthy, Mark I, Ferrer, Jorge
Published in Nature genetics (01.02.2014)
Published in Nature genetics (01.02.2014)
Get full text
Journal Article
Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Gómez-Marín, Carlos, Tena, Juan J, Acemel, Rafael D, López-Mayorga, Macarena, Naranjo, Silvia, de la Calle-Mustienes, Elisa, Maeso, Ignacio, Beccari, Leonardo, Aneas, Ivy, Vielmas, Erika, Bovolenta, Paola, Nobrega, Marcelo A, Carvajal, Jaime, Gómez-Skarmeta, José Luis
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
Get full text
Journal Article
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Franke, Martin, De la Calle-Mustienes, Elisa, Neto, Ana, Almuedo-Castillo, María, Irastorza-Azcarate, Ibai, Acemel, Rafael D, Tena, Juan J, Santos-Pereira, José M, Gómez-Skarmeta, José L
Published in Nature communications (13.09.2021)
Published in Nature communications (13.09.2021)
Get full text
Journal Article
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
Bogdanovic, Ozren, Fernandez-Miñán, Ana, Tena, Juan J, de la Calle-Mustienes, Elisa, Hidalgo, Carmen, van Kruysbergen, Ila, van Heeringen, Simon J, Veenstra, Gert Jan C, Gómez-Skarmeta, José Luis
Published in Genome research (01.10.2012)
Published in Genome research (01.10.2012)
Get full text
Journal Article
Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification
Santos-Pereira, José M, Gallardo-Fuentes, Lourdes, Neto, Ana, Acemel, Rafael D, Tena, Juan J
Published in Nature communications (11.07.2019)
Published in Nature communications (11.07.2019)
Get full text
Journal Article
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Acemel, Rafael D, Tena, Juan J, Irastorza-Azcarate, Ibai, Marlétaz, Ferdinand, Gómez-Marín, Carlos, de la Calle-Mustienes, Elisa, Bertrand, Stéphanie, Diaz, Sergio G, Aldea, Daniel, Aury, Jean-Marc, Mangenot, Sophie, Holland, Peter W H, Devos, Damien P, Maeso, Ignacio, Escrivá, Hector, Gómez-Skarmeta, José Luis
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
Get full text
Journal Article
An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm
Grau-Bové, Xavier, Subirana, Lucie, Meister, Lydvina, Soubigou, Anaël, Neto, Ana, Elek, Anamaria, Naranjo, Silvia, Fornas, Oscar, Gomez-Skarmeta, Jose Luis, Tena, Juan J, Irimia, Manuel, Bertrand, Stéphanie, Sebé-Pedrós, Arnau, Escriva, Hector
Published in Nature communications (29.05.2024)
Published in Nature communications (29.05.2024)
Get full text
Journal Article
Deep conservation of wrist and digit enhancers in fish
Gehrke, Andrew R., Schneider, Igor, de la Calle-Mustienes, Elisa, Tena, Juan J., Gomez-Marin, Carlos, Chandran, Mayuri, Nakamura, Tetsuya, Braasch, Ingo, Postlethwait, John H., Gómez-Skarmeta, José Luis, Shubin, Neil H.
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.2015)
Get full text
Journal Article
Parallel evolution of amphioxus and vertebrate small-scale gene duplications
Brasó-Vives, Marina, Marlétaz, Ferdinand, Echchiki, Amina, Mantica, Federica, Acemel, Rafael D, Gómez-Skarmeta, José L, Hartasánchez, Diego A, Le Targa, Lorlane, Pontarotti, Pierre, Tena, Juan J, Maeso, Ignacio, Escriva, Hector, Irimia, Manuel, Robinson-Rechavi, Marc
Published in Genome Biology (18.11.2022)
Published in Genome Biology (18.11.2022)
Get full text
Journal Article
The little skate genome and the evolutionary emergence of wing-like fins
Marlétaz, Ferdinand, de la Calle-Mustienes, Elisa, Acemel, Rafael D, Paliou, Christina, Naranjo, Silvia, Martínez-García, Pedro Manuel, Cases, Ildefonso, Sleight, Victoria A, Hirschberger, Christine, Marcet-Houben, Marina, Navon, Dina, Andrescavage, Ali, Skvortsova, Ksenia, Duckett, Paul Edward, González-Rajal, Álvaro, Bogdanovic, Ozren, Gibcus, Johan H, Yang, Liyan, Gallardo-Fuentes, Lourdes, Sospedra, Ismael, Lopez-Rios, Javier, Darbellay, Fabrice, Visel, Axel, Dekker, Job, Shubin, Neil, Gabaldón, Toni, Nakamura, Tetsuya, Tena, Juan J, Lupiáñez, Darío G, Rokhsar, Daniel S, Gómez-Skarmeta, José Luis
Published in Nature (London) (20.04.2023)
Published in Nature (London) (20.04.2023)
Get full text
Journal Article
Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
Irimia, Manuel, Tena, Juan J, Alexis, Maria S, Fernandez-Miñan, Ana, Maeso, Ignacio, Bogdanovic, Ozren, de la Calle-Mustienes, Elisa, Roy, Scott W, Gómez-Skarmeta, José L, Fraser, Hunter B
Published in Genome research (01.12.2012)
Published in Genome research (01.12.2012)
Get full text
Journal Article
CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart
Gomez-Velazquez, Melisa, Badia-Careaga, Claudio, Lechuga-Vieco, Ana Victoria, Nieto-Arellano, Rocio, Tena, Juan J, Rollan, Isabel, Alvarez, Alba, Torroja, Carlos, Caceres, Eva F, Roy, Anna R, Galjart, Niels, Delgado-Olguin, Paul, Sanchez-Cabo, Fatima, Enriquez, Jose Antonio, Gomez-Skarmeta, Jose Luis, Manzanares, Miguel
Published in PLoS genetics (01.08.2017)
Published in PLoS genetics (01.08.2017)
Get full text
Journal Article
Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers
Bordeira-Carriço, Renata, Teixeira, Joana, Duque, Marta, Galhardo, Mafalda, Ribeiro, Diogo, Acemel, Rafael D, Firbas, Panos N, Tena, Juan J, Eufrásio, Ana, Marques, Joana, Ferreira, Fábio J, Freitas, Telmo, Carneiro, Fátima, Goméz-Skarmeta, José Luís, Bessa, José
Published in Nature communications (11.04.2022)
Published in Nature communications (11.04.2022)
Get full text
Journal Article
Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus
Kouwenhoven, Evelyn N, van Heeringen, Simon J, Tena, Juan J, Oti, Martin, Dutilh, Bas E, Alonso, M Eva, de la Calle-Mustienes, Elisa, Smeenk, Leonie, Rinne, Tuula, Parsaulian, Lilian, Bolat, Emine, Jurgelenaite, Rasa, Huynen, Martijn A, Hoischen, Alexander, Veltman, Joris A, Brunner, Han G, Roscioli, Tony, Oates, Emily, Wilson, Meredith, Manzanares, Miguel, Gómez-Skarmeta, José Luis, Stunnenberg, Hendrik G, Lohrum, Marion, van Bokhoven, Hans, Zhou, Huiqing
Published in PLoS genetics (01.08.2010)
Published in PLoS genetics (01.08.2010)
Get full text
Journal Article
Functional Conservation of Divergent p63-Bound cis -Regulatory Elements
Gallardo-Fuentes, Lourdes, Santos-Pereira, José M, Tena, Juan J
Published in Frontiers in genetics (29.04.2020)
Published in Frontiers in genetics (29.04.2020)
Get full text
Journal Article
Forkhead transcription factor FKH-8 cooperates with RFX in the direct regulation of sensory cilia in Caenorhabditis elegans
Brocal-Ruiz, Rebeca, Esteve-Serrano, Ainara, Mora-Martínez, Carlos, Franco-Rivadeneira, Maria Luisa, Swoboda, Peter, Tena, Juan J, Vilar, Marçal, Flames, Nuria
Published in eLife (14.07.2023)
Published in eLife (14.07.2023)
Get full text
Journal Article
Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
Vicente-García, Cristina, Villarejo-Balcells, Barbara, Irastorza-Azcárate, Ibai, Naranjo, Silvia, Acemel, Rafael D, Tena, Juan J, Rigby, Peter W J, Devos, Damien P, Gómez-Skarmeta, Jose L, Carvajal, Jaime J
Published in Genome Biology (14.06.2017)
Published in Genome Biology (14.06.2017)
Get full text
Journal Article