mulea: An R package for enrichment analysis using multiple ontologies and empirical false discovery rate
Turek, Cezary, Ölbei, Márton, Stirling, Tamás, Fekete, Gergely, Tasnádi, Ervin, Gul, Leila, Bohár, Balázs, Papp, Balázs, Jurkowski, Wiktor, Ari, Eszter
Published in BMC bioinformatics (18.10.2024)
Published in BMC bioinformatics (18.10.2024)
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Journal Article
3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images
Tasnadi, Ervin A, Toth, Timea, Kovacs, Maria, Diosdi, Akos, Pampaloni, Francesco, Molnar, Jozsef, Piccinini, Filippo, Horvath, Peter
Published in Bioinformatics (01.05.2020)
Published in Bioinformatics (01.05.2020)
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Journal Article
Automatic deep learning-driven label-free image-guided patch clamp system
Koos, Krisztian, Oláh, Gáspár, Balassa, Tamas, Mihut, Norbert, Rózsa, Márton, Ozsvár, Attila, Tasnadi, Ervin, Barzó, Pál, Faragó, Nóra, Puskás, László, Molnár, Gábor, Molnár, József, Tamás, Gábor, Horvath, Peter
Published in Nature communications (10.02.2021)
Published in Nature communications (10.02.2021)
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Journal Article
Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates
Piccinini, Filippo, Balassa, Tamas, Carbonaro, Antonella, Diosdi, Akos, Toth, Timea, Moshkov, Nikita, Tasnadi, Ervin A., Horvath, Peter
Published in Computational and structural biotechnology journal (01.01.2020)
Published in Computational and structural biotechnology journal (01.01.2020)
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Journal Article
Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation
Serra, Angela, Fratello, Michele, Federico, Antonio, Ojha, Ravi, Provenzani, Riccardo, Tasnadi, Ervin, Cattelani, Luca, del Giudice, Giusy, Kinaret, Pia A S, Saarimäki, Laura A, Pavel, Alisa, Kuivanen, Suvi, Cerullo, Vincenzo, Vapalahti, Olli, Horvath, Peter, Lieto, Antonio Di, Yli-Kauhaluoma, Jari, Balistreri, Giuseppe, Greco, Dario
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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Journal Article
Open-Source Tools for Volume Estimation of 3D Multicellular Aggregates
De Santis, Ilaria, Tasnadi, Ervin, Horvath, Peter, Bevilacqua, Alessandro, Piccinini, Filippo
Published in Applied sciences (01.04.2019)
Published in Applied sciences (01.04.2019)
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Journal Article
Nucleus segmentation: towards automated solutions
Hollandi, Reka, Moshkov, Nikita, Paavolainen, Lassi, Tasnadi, Ervin, Piccinini, Filippo, Horvath, Peter
Published in Trends in cell biology (01.04.2022)
Published in Trends in cell biology (01.04.2022)
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Journal Article
Segmentation metric misinterpretations in bioimage analysis
Hirling, Dominik, Tasnadi, Ervin, Caicedo, Juan, Caroprese, Maria V., Sjögren, Rickard, Aubreville, Marc, Koos, Krisztian, Horvath, Peter
Published in Nature methods (01.02.2024)
Published in Nature methods (01.02.2024)
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Journal Article
nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer
Hollandi, Reka, Szkalisity, Abel, Toth, Timea, Tasnadi, Ervin, Molnar, Csaba, Mathe, Botond, Grexa, Istvan, Molnar, Jozsef, Balind, Arpad, Gorbe, Mate, Kovacs, Maria, Migh, Ede, Goodman, Allen, Balassa, Tamas, Koos, Krisztian, Wang, Wenyu, Caicedo, Juan Carlos, Bara, Norbert, Kovacs, Ferenc, Paavolainen, Lassi, Danka, Tivadar, Kriston, Andras, Carpenter, Anne Elizabeth, Smith, Kevin, Horvath, Peter
Published in Cell systems (20.05.2020)
Published in Cell systems (20.05.2020)
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Journal Article
Novel -linked sialoglycan structures in human urinary glycoproteins
Pap, Adam, Tasnadi, Ervin, Medzihradszky, Katalin F, Darula, Zsuzsanna
Published in Molecular omics (14.04.2020)
Published in Molecular omics (14.04.2020)
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Journal Article
Novel O-linked sialoglycan structures in human urinary glycoproteins
Pap, Adam, Tasnadi, Ervin, Medzihradszky, Katalin F, Darula, Zsuzsanna
Published in Molecular omics (01.04.2020)
Published in Molecular omics (01.04.2020)
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Journal Article
mulea - an R package for enrichment analysis using multiple ontologies and empirical FDR correction
Turek, Cezary, Marton Olbei, Stirling, Tamas, Fekete, Gergely, Ervin Tasnadi, Gul, Leila, Bohar, Balazs, Papp, Balazs, Jurkowski, Wiktor, Eszter Ari
Published in bioRxiv (01.03.2024)
Published in bioRxiv (01.03.2024)
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Paper
Active Surfaces for Selective Object Segmentation in 3D
Molnar, Jozsef, Tasnadi, Ervin, Kintses, Balint, Farkas, Zoltan, Pal, Csaba, Horvath, Peter, Danka, Tivadar
Published in 2017 International Conference on Digital Image Computing: Techniques and Applications (DICTA) (01.11.2017)
Published in 2017 International Conference on Digital Image Computing: Techniques and Applications (DICTA) (01.11.2017)
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Conference Proceeding
Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation
Serra, Angela, Fratello, Michele, Federico, Antonio, Ojha, Ravi, Provenzani, Riccardo, Ervin Tasnadi, Cattelani, Luca, Giusy Del Giudice, Pia Anneli Sofia Kinaret, Saarimaki, Laura Aliisa, Pavel, Alisa, Cerullo, Vincenzo, Vapalahti, Olli, Horvath, Peter, Antonio Di Lieto, Yli-Kauhaluoma, Jari, Balistreri, Giuseppe, Greco, Dario
Published in bioRxiv (15.04.2021)
Published in bioRxiv (15.04.2021)
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Paper
A deep learning framework for nucleus segmentation using image style transfer
Hollandi, Reka, Abel Szkalisity, Toth, Timea, Ervin Tasnadi, Molnar, Csaba, Mathe, Botond, Grexa, Istvan, Molnar, Jozsef, Balind, Arpad, Mate Gorbe, Kovacs, Maria, Ede Migh, Goodman, Allen, Balassa, Tamas, Koos, Krisztian, Wang, Wenyu, Bara, Norbert, Kovacs, Ferenc, Paavolainen, Lassi, Tivadar Danka, Kriston, Andras, Carpenter, Anne E, Smith, Kevin, Horvath, Peter
Published in bioRxiv (17.03.2019)
Published in bioRxiv (17.03.2019)
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Paper