Dissecting cellular crosstalk by sequencing physically interacting cells
Giladi, Amir, Cohen, Merav, Medaglia, Chiara, Baran, Yael, Li, Baoguo, Zada, Mor, Bost, Pierre, Blecher-Gonen, Ronnie, Salame, Tomer-Meir, Mayer, Johannes U, David, Eyal, Ronchese, Franca, Tanay, Amos, Amit, Ido
Published in Nature biotechnology (01.05.2020)
Published in Nature biotechnology (01.05.2020)
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Journal Article
Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells
Meir, Zohar, Mukamel, Zohar, Chomsky, Elad, Lifshitz, Aviezer, Tanay, Amos
Published in Nature genetics (01.07.2020)
Published in Nature genetics (01.07.2020)
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Journal Article
MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing
Keren-Shaul, Hadas, Kenigsberg, Ephraim, Jaitin, Diego Adhemar, David, Eyal, Paul, Franziska, Tanay, Amos, Amit, Ido
Published in Nature protocols (01.06.2019)
Published in Nature protocols (01.06.2019)
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Journal Article
Cell-cycle dynamics of chromosomal organization at single-cell resolution
Nagano, Takashi, Lubling, Yaniv, Várnai, Csilla, Dudley, Carmel, Leung, Wing, Baran, Yael, Mendelson Cohen, Netta, Wingett, Steven, Fraser, Peter, Tanay, Amos
Published in Nature (London) (06.07.2017)
Published in Nature (London) (06.07.2017)
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Journal Article
MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
Baran, Yael, Bercovich, Akhiad, Sebe-Pedros, Arnau, Lubling, Yaniv, Giladi, Amir, Chomsky, Elad, Meir, Zohar, Hoichman, Michael, Lifshitz, Aviezer, Tanay, Amos
Published in Genome Biology (11.10.2019)
Published in Genome Biology (11.10.2019)
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Journal Article
Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis
Ben-Kiki, Oren, Bercovich, Akhiad, Lifshitz, Aviezer, Tanay, Amos
Published in Genome Biology (19.04.2022)
Published in Genome Biology (19.04.2022)
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Journal Article
A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity
Levy, Shani, Elek, Anamaria, Grau-Bové, Xavier, Menéndez-Bravo, Simón, Iglesias, Marta, Tanay, Amos, Mass, Tali, Sebé-Pedrós, Arnau
Published in Cell (27.05.2021)
Published in Cell (27.05.2021)
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Journal Article
Early metazoan cell type diversity and the evolution of multicellular gene regulation
Sebé-Pedrós, Arnau, Chomsky, Elad, Pang, Kevin, Lara-Astiaso, David, Gaiti, Federico, Mukamel, Zohar, Amit, Ido, Hejnol, Andreas, Degnan, Bernard M, Tanay, Amos
Published in Nature ecology & evolution (01.07.2018)
Published in Nature ecology & evolution (01.07.2018)
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Journal Article
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
Vietri Rudan, Matteo, Barrington, Christopher, Henderson, Stephen, Ernst, Christina, Odom, Duncan T., Tanay, Amos, Hadjur, Suzana
Published in Cell reports (Cambridge) (03.03.2015)
Published in Cell reports (Cambridge) (03.03.2015)
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Journal Article
The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome
Gury-BenAri, Meital, Thaiss, Christoph A., Serafini, Nicolas, Winter, Deborah R., Giladi, Amir, Lara-Astiaso, David, Levy, Maayan, Salame, Tomer Meir, Weiner, Assaf, David, Eyal, Shapiro, Hagit, Dori-Bachash, Mally, Pevsner-Fischer, Meirav, Lorenzo-Vivas, Erika, Keren-Shaul, Hadas, Paul, Franziska, Harmelin, Alon, Eberl, Gérard, Itzkovitz, Shalev, Tanay, Amos, Di Santo, James P., Elinav, Eran, Amit, Ido
Published in Cell (25.08.2016)
Published in Cell (25.08.2016)
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Journal Article
Cohesin-mediated interactions organize chromosomal domain architecture
Sofueva, Sevil, Yaffe, Eitan, Chan, Wen-Ching, Georgopoulou, Dimitra, Vietri Rudan, Matteo, Mira-Bontenbal, Hegias, Pollard, Steven M, Schroth, Gary P, Tanay, Amos, Hadjur, Suzana
Published in The EMBO journal (11.12.2013)
Published in The EMBO journal (11.12.2013)
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Journal Article
DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation
Batra, Rajbir Nath, Lifshitz, Aviezer, Vidakovic, Ana Tufegdzic, Chin, Suet-Feung, Sati-Batra, Ankita, Sammut, Stephen-John, Provenzano, Elena, Ali, H Raza, Dariush, Ali, Bruna, Alejandra, Murphy, Leigh, Purushotham, Arnie, Ellis, Ian, Green, Andrew, Garrett-Bakelman, Francine E, Mason, Chris, Melnick, Ari, Aparicio, Samuel A J R, Rueda, Oscar M, Tanay, Amos, Caldas, Carlos
Published in Nature communications (13.09.2021)
Published in Nature communications (13.09.2021)
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Journal Article
MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases
Ben-Kiki, Oren, Bercovich, Akhiad, Lifshitz, Aviezer, Raz, Ofir, Brook, Dror, Tanay, Amos
Published in Genome Biology (05.10.2023)
Published in Genome Biology (05.10.2023)
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Journal Article
Hormone seasonality in medical records suggests circannual endocrine circuits
Tendler, Avichai, Bar, Alon, Mendelsohn-Cohen, Netta, Karin, Omer, Korem Kohanim, Yael, Maimon, Lior, Milo, Tomer, Raz, Moriya, Mayo, Avi, Tanay, Amos, Alon, Uri
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2021)
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Journal Article
Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma
Ledergor, Guy, Weiner, Assaf, Zada, Mor, Wang, Shuang-Yin, Cohen, Yael C, Gatt, Moshe E, Snir, Nimrod, Magen, Hila, Koren-Michowitz, Maya, Herzog-Tzarfati, Katrin, Keren-Shaul, Hadas, Bornstein, Chamutal, Rotkopf, Ron, Yofe, Ido, David, Eyal, Yellapantula, Venkata, Kay, Sigalit, Salai, Moshe, Ben Yehuda, Dina, Nagler, Arnon, Shvidel, Lev, Orr-Urtreger, Avi, Halpern, Keren Bahar, Itzkovitz, Shalev, Landgren, Ola, San-Miguel, Jesus, Paiva, Bruno, Keats, Jonathan J, Papaemmanuil, Elli, Avivi, Irit, Barbash, Gabriel I, Tanay, Amos, Amit, Ido
Published in Nature medicine (01.12.2018)
Published in Nature medicine (01.12.2018)
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Journal Article
Deterministic direct reprogramming of somatic cells to pluripotency
Rais, Yoach, Zviran, Asaf, Geula, Shay, Gafni, Ohad, Chomsky, Elad, Viukov, Sergey, Mansour, Abed AlFatah, Caspi, Inbal, Krupalnik, Vladislav, Zerbib, Mirie, Maza, Itay, Mor, Nofar, Baran, Dror, Weinberger, Leehee, Jaitin, Diego A, Lara-Astiaso, David, Blecher-Gonen, Ronnie, Shipony, Zohar, Mukamel, Zohar, Hagai, Tzachi, Gilad, Shlomit, Amann-Zalcenstein, Daniela, Tanay, Amos, Amit, Ido, Novershtern, Noa, Hanna, Jacob H
Published in Nature (London) (01.10.2013)
Published in Nature (London) (01.10.2013)
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Journal Article
Recurrent deletions in clonal hematopoiesis are driven by microhomology-mediated end joining
Feldman, Tzah, Bercovich, Akhiad, Moskovitz, Yoni, Chapal-Ilani, Noa, Mitchell, Amanda, Medeiros, Jessie J F, Biezuner, Tamir, Kaushansky, Nathali, Minden, Mark D, Gupta, Vikas, Milyavsky, Michael, Livneh, Zvi, Tanay, Amos, Shlush, Liran I
Published in Nature communications (28.04.2021)
Published in Nature communications (28.04.2021)
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