Geometrical Conversion of the EGFR Extracellular Domain by Adiabatic Mapping Combining Normal Mode Analysis of the Elastic Network Model and Energy Optimization
Nojima, Hiroyuki, Kiyota, Yasuomi, Terashi, Genki, Takeda-Shitaka, Mayuko, Matsubara, Hajime
Published in Chemical & pharmaceutical bulletin (01.10.2019)
Published in Chemical & pharmaceutical bulletin (01.10.2019)
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Journal Article
Fams-ace: A combined method to select the best model after remodeling all server models
Terashi, Genki, Takeda-Shitaka, Mayuko, Kanou, Kazuhiko, Iwadate, Mitsuo, Takaya, Daisuke, Hosoi, Akio, Ohta, Kazuhiro, Umeyama, Hideaki
Published in Proteins, structure, function, and bioinformatics (2007)
Published in Proteins, structure, function, and bioinformatics (2007)
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Journal Article
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
Brysbaert, Guillaume, Raouraoua, Nessim, Bates, Paul A., Giulini, Marco, Honorato, Rodrigo V., Noort, Charlotte, Teixeira, Joao M. C., Bonvin, Alexandre M. J. J., Kong, Ren, Shi, Hang, Lu, Xufeng, Chang, Shan, Guo, Zhiye, Chen, Xiao, Roy, Raj S., Wu, Tianqi, Giri, Nabin, Quadir, Farhan, Chen, Chen, Cheng, Jianlin, Del Carpio, Carlos A., Ichiishi, Eichiro, Rodriguez‐Lumbreras, Luis A., Fernandez‐Recio, Juan, Harmalkar, Ameya, Chu, Lee‐Shin, Canner, Sam, Smanta, Rituparna, Gray, Jeffrey J., Li, Hao, Lin, Peicong, He, Jiahua, Tao, Huanyu, Huang, Sheng‐You, Roel‐Touris, Jorge, Jimenez‐Garcia, Brian, Christoffer, Charles W., Jain, Anika J., Kagaya, Yuki, Kannan, Harini, Nakamura, Tsukasa, Terashi, Genki, Zhang, Yuanyuan, Zhang, Zicong, Fujuta, Hayato, Sekijima, Masakazu, Kihara, Daisuke, Khan, Omeir, Kotelnikov, Sergei, Ghani, Usman, Beglov, Dmitri, Vajda, Sandor, Negi, Surendra S., Ricciardelli, Tiziana, Barradas‐Bautista, Didier, Cao, Zhen, Chawla, Mohit, Cavallo, Luigi, Yin, Rui, Guest, Johnathan D., Lee, Jessica, Pierce, Brian G., Shor, Ben, Cohen, Tomer, Halfon, Matan, Schneidman‐Duhovny, Dina, Zhu, Shaowen, Sun, Yuanfei, Shen, Yang, Maszota‐Zieleniak, Martyna, Bojarski, Krzysztof K., Lubecka, Emilia A., Marcisz, Mateusz, Danielsson, Annemarie, Dziadek, Lukasz, Gieldon, Artur, Liwo, Adam, Samsonov, Sergey A., Slusarz, Rafal, Zieba, Karolina, Sieradzan, Adam K., Czaplewski, Cezary, Kobayashi, Shinpei, Miyakawa, Yuta, Kiyota, Yasuomi, Takeda‐Shitaka, Mayuko, Olechnovic, Kliment, Valancauskas, Lukas, Venclovas, Ceslovas, Yang, Lin, Hou, Chengyu, He, Xiaodong, Guo, Shuai, Jiang, Shenda, Ma, Xiaoliang, Duan, Rui, Xu, Xianjin, Zou, Xiaoqin, Velankar, Sameer, Wodak, Shoshana J.
Published in Proteins, structure, function, and bioinformatics (01.12.2023)
Published in Proteins, structure, function, and bioinformatics (01.12.2023)
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Journal Article
Bioinformatics Based Ligand-Docking and in-Silico Screening
Takaya, Daisuke, Takeda-Shitaka, Mayuko, Terashi, Genki, Kanou, Kazuhiko, Iwadate, Mitsuo, Umeyama, Hideaki
Published in Chemical & Pharmaceutical Bulletin (01.05.2008)
Published in Chemical & Pharmaceutical Bulletin (01.05.2008)
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Journal Article
Interaction between the antigen and antibody is controlled by the constant domains: Normal mode dynamics of the HEL–HyHEL‐10 complex
Adachi, Masaaki, Kurihara, Youji, Nojima, Hiroyuki, Takeda‐Shitaka, Mayuko, Kamiya, Kenshu, Umeyama, Hideaki
Published in Protein science (01.10.2003)
Published in Protein science (01.10.2003)
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Journal Article
Dynamic Influence of the Two Membrane-Proximal Immunoglobulin-Like Domains upon the Peptide-Binding Platform Domain in Class I and Class II Major Histocompatibility Complexes: Normal Mode Analysis
Nojima, Hiroyuki, Kanou, Kazuhiko, Kamiya, Kenshu, Atsuda, Koichiro, Umeyama, Hideaki, Takeda-Shitaka, Mayuko
Published in Chemical & Pharmaceutical Bulletin (01.11.2009)
Published in Chemical & Pharmaceutical Bulletin (01.11.2009)
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Journal Article
Dynamic Interaction among the Platform Domain and Two Membrane-Proximal Immunoglobulin-Like Domains of Class I Major Histocompatibility Complex: Normal Mode Analysis
Nojima, Hiroyuki, Takeda-Shitaka, Mayuko, Kanou, Kazuhiko, Kamiya, Kenshu, Umeyama, Hideaki
Published in Chemical & Pharmaceutical Bulletin (01.05.2008)
Published in Chemical & Pharmaceutical Bulletin (01.05.2008)
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Journal Article
Evaluation of Homology Modeling of the Severe Acute Respiratory Syndrome (SARS) Coronavirus Main Protease for Structure Based Drug Design
Takeda-Shitaka, Mayuko, Nojima, Hiroyuki, Takaya, Daisuke, Kanou, Kazuhiko, Iwadate, Mitsuo, Umeyama, Hideaki
Published in Chemical & Pharmaceutical Bulletin (01.05.2004)
Published in Chemical & Pharmaceutical Bulletin (01.05.2004)
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Journal Article
Evaluation of the third solvent clusters fitting procedure for the prediction of protein-protein interactions based on the results at the CAPRI blind docking study
Komatsu, Katsuichiro, Kurihara, Youji, Iwadate, Mitsuo, Takeda-Shitaka, Mayuko, Umeyama, Hideaki
Published in Proteins, structure, function, and bioinformatics (01.07.2003)
Published in Proteins, structure, function, and bioinformatics (01.07.2003)
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Journal Article
Dynamic Characteristics of a Peptide-Binding Groove of Human HLA-A2 Class I MHC Molecules: Normal Mode Analysis of the Antigen Peptide–Class I MHC Complex
Nojima, Hiroyuki, Takeda-Shitaka, Mayuko, Kurihara, Youji, Adachi, Masaaki, Yoneda, Shigetaka, Kamiya, Kenshu, Umeyama, Hideaki
Published in Chemical & pharmaceutical bulletin (01.09.2002)
Published in Chemical & pharmaceutical bulletin (01.09.2002)
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Journal Article
The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation
Terashi, Genki, Takeda-Shitaka, Mayuko, Kanou, Kazuhiko, Iwadate, Mitsuo, Takaya, Daisuke, Umeyama, Hideaki
Published in Proteins, structure, function, and bioinformatics (01.12.2007)
Published in Proteins, structure, function, and bioinformatics (01.12.2007)
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Journal Article
Dynamic Flexibility of a Peptide-Binding Groove of Human HLA-DR1 Class II MHC Molecules: Normal Mode Analysis of the Antigen Peptide–Class II MHC Complex
Nojima, Hiroyuki, Takeda-Shitaka, Mayuko, Kurihara, Youji, Kamiya, Kenshu, Umeyama, Hideaki
Published in Chemical & Pharmaceutical Bulletin (2003)
Published in Chemical & Pharmaceutical Bulletin (2003)
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Journal Article