MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Li, Dinghua, Liu, Chi-Man, Luo, Ruibang, Sadakane, Kunihiko, Lam, Tak-Wah
Published in Bioinformatics (15.05.2015)
Published in Bioinformatics (15.05.2015)
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Journal Article
A multi-task convolutional deep neural network for variant calling in single molecule sequencing
Luo, Ruibang, Sedlazeck, Fritz J., Lam, Tak-Wah, Schatz, Michael C.
Published in Nature communications (01.03.2019)
Published in Nature communications (01.03.2019)
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Journal Article
SOAP2: an improved ultrafast tool for short read alignment
Li, Ruiqiang, Yu, Chang, Li, Yingrui, Lam, Tak-Wah, Yiu, Siu-Ming, Kristiansen, Karsten, Wang, Jun
Published in Bioinformatics (01.08.2009)
Published in Bioinformatics (01.08.2009)
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Journal Article
Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP
Yu, Huijing, Zheng, Zhenxian, Su, Junhao, Lam, Tak-Wah, Luo, Ruibang
Published in BMC bioinformatics (03.08.2023)
Published in BMC bioinformatics (03.08.2023)
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Journal Article
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads
LIU, Chi-Man, WONG, Thomas, RUIQIANG LI, LAM, Tak-Wah, WU, Edward, RUIBANG LUO, YIU, Siu-Ming, YINGRUI LI, BINGQIANG WANG, CHANG YU, XIAOWEN CHU, KAIYONG ZHAO
Published in Bioinformatics (Oxford, England) (15.03.2012)
Published in Bioinformatics (Oxford, England) (15.03.2012)
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Journal Article
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Luo, Ruibang, Liu, Binghang, Xie, Yinlong, Li, Zhenyu, Huang, Weihua, Yuan, Jianying, He, Guangzhu, Chen, Yanxiang, Pan, Qi, Liu, Yunjie, Tang, Jingbo, Wu, Gengxiong, Zhang, Hao, Shi, Yujian, Liu, Yong, Yu, Chang, Wang, Bo, Lu, Yao, Han, Changlei, Cheung, David W, Yiu, Siu-Ming, Peng, Shaoliang, Xiaoqian, Zhu, Liu, Guangming, Liao, Xiangke, Li, Yingrui, Yang, Huanming, Wang, Jian, Lam, Tak-Wah, Wang, Jun
Published in Gigascience (27.12.2012)
Published in Gigascience (27.12.2012)
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Journal Article
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
BINGHANG LIU, JIANYING YUAN, RUIBANG LUO, YIU, Siu-Ming, ZHENYU LI, YINLONG XIE, YANXIANG CHEN, YUJIAN SHI, HAO ZHANG, YINGRUI LI, LAM, Tak-Wah
Published in Bioinformatics (15.11.2012)
Published in Bioinformatics (15.11.2012)
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Journal Article
Detecting structural variations with precise breakpoints using low-depth WGS data from a single oxford nanopore MinION flowcell
Leung, Henry C. M., Yu, Huijing, Zhang, Yifan, Leung, Wing Sze, Lo, Ivan F. M., Luk, Ho Ming, Law, Wai-Chun, Ma, Ka Kui, Wong, Chak Lim, Wong, Yat Sing, Luo, Ruibang, Lam, Tak-Wah
Published in Scientific reports (16.03.2022)
Published in Scientific reports (16.03.2022)
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Journal Article
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner
Luo, Ruibang, Wong, Thomas, Zhu, Jianqiao, Liu, Chi-Man, Zhu, Xiaoqian, Wu, Edward, Lee, Lap-Kei, Lin, Haoxiang, Zhu, Wenjuan, Cheung, David W, Ting, Hing-Fung, Yiu, Siu-Ming, Peng, Shaoliang, Yu, Chang, Li, Yingrui, Li, Ruiqiang, Lam, Tak-Wah
Published in PloS one (31.05.2013)
Published in PloS one (31.05.2013)
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Journal Article
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data
Leung, Chi-Ming, Li, Dinghua, Xin, Yan, Law, Wai-Chun, Zhang, Yifan, Ting, Hing-Fung, Luo, Ruibang, Lam, Tak-Wah
Published in BMC genomics (21.12.2020)
Published in BMC genomics (21.12.2020)
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Journal Article
Scheduling with gaps: new models and algorithms
Chrobak, Marek, Golin, Mordecai, Lam, Tak-Wah, Nogneng, Dorian
Published in Journal of scheduling (01.08.2021)
Published in Journal of scheduling (01.08.2021)
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Journal Article
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs
Li, Dinghua, Huang, Yukun, Leung, Chi-Ming, Luo, Ruibang, Ting, Hing-Fung, Lam, Tak-Wah
Published in BMC bioinformatics (16.10.2017)
Published in BMC bioinformatics (16.10.2017)
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Journal Article
Evaluation of Mycobacterium tuberculosis enrichment in metagenomic samples using ONT adaptive sequencing and amplicon sequencing for identification and variant calling
Su, Junhao, Lui, Wui Wang, Lee, YanLam, Zheng, Zhenxian, Siu, Gilman Kit-Hang, Ng, Timothy Ting-Leung, Zhang, Tong, Lam, Tommy Tsan-Yuk, Lao, Hiu-Yin, Yam, Wing-Cheong, Tam, Kingsley King-Gee, Leung, Kenneth Siu-Sing, Lam, Tak-Wah, Leung, Amy Wing-Sze, Luo, Ruibang
Published in Scientific reports (31.03.2023)
Published in Scientific reports (31.03.2023)
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Journal Article
Integrated modeling framework reveals co-regulation of transcription factors, miRNAs and lncRNAs on cardiac developmental dynamics
Li, Shumin, Yan, Bin, Wu, Binbin, Su, Junhao, Lu, Jianliang, Lam, Tak-Wah, Boheler, Kenneth R, Poon, Ellen Ngar-Yun, Luo, Ruibang
Published in Stem cell research & therapy (13.09.2023)
Published in Stem cell research & therapy (13.09.2023)
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Journal Article
Genome instability-derived genes as a novel prognostic signature for lung adenocarcinoma
Zhang, Xu, Lam, Tak-Wah, Ting, Hing-Fung
Published in Frontiers in cell and developmental biology (16.08.2023)
Published in Frontiers in cell and developmental biology (16.08.2023)
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Journal Article
Ultra-low-coverage genome-wide association study-insights into gestational age using 17,844 embryo samples with preimplantation genetic testing
Li, Shumin, Yan, Bin, Li, Thomas K T, Lu, Jianliang, Gu, Yifan, Tan, Yueqiu, Gong, Fei, Lam, Tak-Wah, Xie, Pingyuan, Wang, Yuexuan, Lin, Ge, Luo, Ruibang
Published in Genome medicine (14.02.2023)
Published in Genome medicine (14.02.2023)
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Journal Article
Building a Chinese pan-genome of 486 individuals
Li, Qiuhui, Tian, Shilin, Yan, Bin, Liu, Chi Man, Lam, Tak-Wah, Li, Ruiqiang, Luo, Ruibang
Published in Communications biology (30.08.2021)
Published in Communications biology (30.08.2021)
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Journal Article
ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell
Leung, Amy Wing-Sze, Leung, Henry Chi-Ming, Wong, Chak-Lim, Zheng, Zhen-Xian, Lui, Wui-Wang, Luk, Ho-Ming, Lo, Ivan Fai-Man, Luo, Ruibang, Lam, Tak-Wah
Published in BMC medical genomics (04.03.2022)
Published in BMC medical genomics (04.03.2022)
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Journal Article