Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes
Goss, Erica M., Tabima, Javier F., Cooke, David E. L., Restrepo, Silvia, Fry, William E., Forbes, Gregory A., Fieland, Valerie J., Cardenas, Martha, Grünwald, Niklaus J.
Published in Proceedings of the National Academy of Sciences - PNAS (17.06.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (17.06.2014)
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Journal Article
Secreted Effector Proteins of Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways
Zhao, Yao, Zheng, Xinyue, Tabima, Javier F, Zhu, Sheng, Søndreli, Kelsey L, Hundley, Hope, Bauer, Diane, Barry, Kerrie, Zhang, Yaxin, Schmutz, Jeremy, Wang, Yuanchao, LeBoldus, Jared M, Xiong, Qin
Published in Molecular plant-microbe interactions (01.12.2023)
Published in Molecular plant-microbe interactions (01.12.2023)
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Journal Article
Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome Plasticity and Horizontal Gene Transfer
Kronmiller, Brent A, Feau, Nicolas, Shen, Danyu, Tabima, Javier F, Ali, Shahin S, Armitage, Andrew D, Arredondo, Felipe, Bailey, Bryan A, Bollmann, Stephanie R, Dale, Angela, Harrison, Richard J, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte F, Panda, Preeti, Tripathy, Sucheta, Williams, Nari M, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard C, Grünwald, Niklaus J
Published in Molecular plant-microbe interactions (01.01.2023)
Published in Molecular plant-microbe interactions (01.01.2023)
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Journal Article
Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
Tabima, Javier F, Trautman, Ian A, Chang, Ying, Wang, Yan, Mondo, Stephen, Kuo, Alan, Salamov, Asaf, Grigoriev, Igor V, Stajich, Jason E, Spatafora, Joseph W
Published in G3 : genes - genomes - genetics (01.09.2020)
Published in G3 : genes - genomes - genetics (01.09.2020)
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Journal Article
Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae
Tabima, Javier F, Kronmiller, Brent A, Press, Caroline M, Tyler, Brett M, Zasada, Inga A, Grünwald, Niklaus J
Published in Molecular plant-microbe interactions (01.10.2017)
Published in Molecular plant-microbe interactions (01.10.2017)
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Journal Article
Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races
Adams, Thomas M, Armitage, Andrew D, Sobczyk, Maria K, Bates, Helen J, Tabima, Javier F, Kronmiller, Brent A, Tyler, Brett M, Grünwald, Niklaus J, Dunwell, Jim M, Nellist, Charlotte F, Harrison, Richard J
Published in Frontiers in microbiology (15.04.2020)
Published in Frontiers in microbiology (15.04.2020)
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Journal Article
The Dictyostelium discoideum genome lacks significant DNA methylation and uncovers palindromic sequences as a source of false positives in bisulfite sequencing
Drewell, Robert A, Cormier, Tayla C, Steenwyk, Jacob L, Denis, James St, Tabima, Javier F, Dresch, Jacqueline M, Larochelle, Denis A
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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Journal Article
Herptile gut microbiomes: a natural system to study multi-kingdom interactions between filamentous fungi and bacteria
Vargas-Gastélum, Lluvia, Romer, Alexander S, Ghotbi, Marjan, Dallas, Jason W, Alexander, N Reed, Moe, Kylie C, McPhail, Kerry L, Neuhaus, George F, Shadmani, Leila, Spatafora, Joseph W, Stajich, Jason E, Tabima, Javier F, Walker, Donald M
Published in mSphere (26.03.2024)
Published in mSphere (26.03.2024)
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Journal Article
QTL Analysis of Adult Plant Resistance to Stripe Rust in a Winter Wheat Recombinant Inbred Population
Brandt, Kali M, Chen, Xianming, Tabima, Javier F, See, Deven R, Vining, Kelly J, Zemetra, Robert S
Published in Plants (Basel) (18.03.2021)
Published in Plants (Basel) (18.03.2021)
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Journal Article
Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria
Davis Ii, Edward W, Weisberg, Alexandra J, Tabima, Javier F, Grunwald, Niklaus J, Chang, Jeff H
Published in PeerJ (San Francisco, CA) (19.07.2016)
Published in PeerJ (San Francisco, CA) (19.07.2016)
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Journal Article
Evolution of the U.S. Biological Select Agent Rathayibacter toxicus
Davis, 2nd, Edward W, Tabima, Javier F, Weisberg, Alexandra J, Lopes, Lucas Dantas, Wiseman, Michele S, Wiseman, Michael S, Pupko, Tal, Belcher, Michael S, Sechler, Aaron J, Tancos, Matt A, Schroeder, Brenda K, Murray, Timothy D, Luster, Douglas G, Schneider, William L, Rogers, Elizabeth E, Andreote, Fernando D, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H
Published in mBio (28.08.2018)
Published in mBio (28.08.2018)
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Journal Article
Genetic Diversity and Aggressiveness of Fusarium virguliforme Isolates Across the Midwestern United States
Olarte, Rodrigo A, Hall, Rebecca, Tabima, Javier F, Malvick, Dean, Bushley, Kathryn
Published in Phytopathology (01.06.2022)
Published in Phytopathology (01.06.2022)
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Journal Article
Microbe-ID: an open source toolbox for microbial genotyping and species identification
Tabima, Javier F, Everhart, Sydney E, Larsen, Meredith M, Weisberg, Alexandra J, Kamvar, Zhian N, Tancos, Matthew A, Smart, Christine D, Chang, Jeff H, Grünwald, Niklaus J
Published in PeerJ (San Francisco, CA) (18.08.2016)
Published in PeerJ (San Francisco, CA) (18.08.2016)
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Journal Article