Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
MacLean, Brendan, Tomazela, Daniela M., Shulman, Nicholas, Chambers, Matthew, Finney, Gregory L., Frewen, Barbara, Kern, Randall, Tabb, David L., Liebler, Daniel C., MacCoss, Michael J.
Published in Bioinformatics (01.04.2010)
Published in Bioinformatics (01.04.2010)
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Journal Article
Employing ProteoWizard to Convert Raw Mass Spectrometry Data
Holman, Jerry D, Tabb, David L, Mallick, Parag
Published in Current protocols in bioinformatics (17.06.2014)
Published in Current protocols in bioinformatics (17.06.2014)
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Journal Article
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L, Dianes, José A, Del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W, Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Published in Nature methods (01.08.2016)
Published in Nature methods (01.08.2016)
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Journal Article
The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae
Gibbons, John G., Salichos, Leonidas, Slot, Jason C., Rinker, David C., McGary, Kriston L., King, Jonas G., Klich, Maren A., Tabb, David L., McDonald, W. Hayes, Rokas, Antonis
Published in Current biology (07.08.2012)
Published in Current biology (07.08.2012)
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Journal Article
MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets
Potgieter, Matthys G, Nel, Andrew J M, Fortuin, Suereta, Garnett, Shaun, Wendoh, Jerome M, Tabb, David L, Mulder, Nicola J, Blackburn, Jonathan M
Published in PLoS computational biology (01.06.2023)
Published in PLoS computational biology (01.06.2023)
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Journal Article
A Face in the Crowd: Recognizing Peptides Through Database Search
Eng, Jimmy K., Searle, Brian C., Clauser, Karl R., Tabb, David L.
Published in Molecular & cellular proteomics (01.11.2011)
Published in Molecular & cellular proteomics (01.11.2011)
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Journal Article
Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency
Zhang, Bing, Chambers, Matthew C, Tabb, David L
Published in Journal of proteome research (01.09.2007)
Published in Journal of proteome research (01.09.2007)
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Journal Article
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work
Deutsch, Eric W, Orchard, Sandra, Binz, Pierre-Alain, Bittremieux, Wout, Eisenacher, Martin, Hermjakob, Henning, Kawano, Shin, Lam, Henry, Mayer, Gerhard, Menschaert, Gerben, Perez-Riverol, Yasset, Salek, Reza M, Tabb, David L, Tenzer, Stefan, Vizcaíno, Juan Antonio, Walzer, Mathias, Jones, Andrew R
Published in Journal of proteome research (01.12.2017)
Published in Journal of proteome research (01.12.2017)
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Journal Article
Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance
Ali, Ali Elnaeim Elbasheir, Husselmann, Lizex Hollenbach, Tabb, David L, Ludidi, Ndiko
Published in Life (Basel, Switzerland) (01.01.2023)
Published in Life (Basel, Switzerland) (01.01.2023)
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Journal Article
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
Deutsch, Eric W., Vizcaíno, Juan Antonio, Jones, Andrew R., Binz, Pierre-Alain, Lam, Henry, Klein, Joshua, Bittremieux, Wout, Perez-Riverol, Yasset, Tabb, David L., Walzer, Mathias, Ricard-Blum, Sylvie, Hermjakob, Henning, Neumann, Steffen, Mak, Tytus D., Kawano, Shin, Mendoza, Luis, Van Den Bossche, Tim, Gabriels, Ralf, Bandeira, Nuno, Carver, Jeremy, Pullman, Benjamin, Sun, Zhi, Hoffmann, Nils, Shofstahl, Jim, Zhu, Yunping, Licata, Luana, Quaglia, Federica, Tosatto, Silvio C. E., Orchard, Sandra E.
Published in Journal of proteome research (03.02.2023)
Published in Journal of proteome research (03.02.2023)
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Journal Article
SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways
Nweke, Ekene Emmanuel, Naicker, Previn, Aron, Shaun, Stoychev, Stoyan, Devar, John, Tabb, David L, Omoshoro-Jones, Jones, Smith, Martin, Candy, Geoffrey
Published in PloS one (13.10.2020)
Published in PloS one (13.10.2020)
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Journal Article
enterocyte microvillus is a vesicle-generating organelle
McConnell, Russell E, Higginbotham, James N, Shifrin, David A. Jr, Tabb, David L, Coffey, Robert J, Tyska, Matthew J
Published in The Journal of cell biology (29.06.2009)
Published in The Journal of cell biology (29.06.2009)
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Journal Article
Proteomic Analysis of Chinese Hamster Ovary Cells
Baycin-Hizal, Deniz, Tabb, David L, Chaerkady, Raghothama, Chen, Lily, Lewis, Nathan E, Nagarajan, Harish, Sarkaria, Vishaldeep, Kumar, Amit, Wolozny, Daniel, Colao, Joe, Jacobson, Elena, Tian, Yuan, O’Meally, Robert N, Krag, Sharon S, Cole, Robert N, Palsson, Bernhard O, Zhang, Hui, Betenbaugh, Michael
Published in Journal of proteome research (02.11.2012)
Published in Journal of proteome research (02.11.2012)
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Journal Article
The Human Proteome Organization–Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry
Bittremieux, Wout, Walzer, Mathias, Tenzer, Stefan, Zhu, Weimin, Salek, Reza M, Eisenacher, Martin, Tabb, David L
Published in Analytical chemistry (Washington) (18.04.2017)
Published in Analytical chemistry (Washington) (18.04.2017)
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Journal Article
Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification
Kochen, Michael A, Chambers, Matthew C, Holman, Jay D, Nesvizhskii, Alexey I, Weintraub, Susan T, Belisle, John T, Islam, M. Nurul, Griss, Johannes, Tabb, David L
Published in Analytical chemistry (Washington) (07.06.2016)
Published in Analytical chemistry (Washington) (07.06.2016)
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Journal Article
Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer
Woo, Sunghee, Cha, Seong Won, Bonissone, Stefano, Na, Seungjin, Tabb, David L, Pevzner, Pavel A, Bafna, Vineet
Published in Journal of proteome research (04.09.2015)
Published in Journal of proteome research (04.09.2015)
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Journal Article