In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level
McDole, Katie, Guignard, Léo, Amat, Fernando, Berger, Andrew, Malandain, Grégoire, Royer, Loïc A., Turaga, Srinivas C., Branson, Kristin, Keller, Philipp J.
Published in Cell (18.10.2018)
Published in Cell (18.10.2018)
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Journal Article
Connectomic reconstruction of the inner plexiform layer in the mouse retina
Helmstaedter, Moritz, Briggman, Kevin L., Turaga, Srinivas C., Jain, Viren, Seung, H. Sebastian, Denk, Winfried
Published in Nature (London) (08.08.2013)
Published in Nature (London) (08.08.2013)
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Journal Article
Behavioral state coding by molecularly defined paraventricular hypothalamic cell type ensembles
Xu, Shengjin, Yang, Hui, Menon, Vilas, Lemire, Andrew L., Wang, Lihua, Henry, Fredrick E., Turaga, Srinivas C., Sternson, Scott M.
Published in Science (American Association for the Advancement of Science) (16.10.2020)
Published in Science (American Association for the Advancement of Science) (16.10.2020)
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Journal Article
Space–time wiring specificity supports direction selectivity in the retina
Kim, Jinseop S., Greene, Matthew J., Zlateski, Aleksandar, Lee, Kisuk, Richardson, Mark, Turaga, Srinivas C., Purcaro, Michael, Balkam, Matthew, Robinson, Amy, Behabadi, Bardia F., Campos, Michael, Denk, Winfried, Seung, H. Sebastian
Published in Nature (London) (15.05.2014)
Published in Nature (London) (15.05.2014)
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Journal Article
Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse
Kim, Yongsoo, Venkataraju, Kannan Umadevi, Pradhan, Kith, Mende, Carolin, Taranda, Julian, Turaga, Srinivas C., Arganda-Carreras, Ignacio, Ng, Lydia, Hawrylycz, Michael J., Rockland, Kathleen S., Seung, H. Sebastian, Osten, Pavel
Published in Cell reports (Cambridge) (13.01.2015)
Published in Cell reports (Cambridge) (13.01.2015)
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Journal Article
Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation
Turaga, Srinivas C., Murray, Joseph F., Jain, Viren, Roth, Fabian, Helmstaedter, Moritz, Briggman, Kevin, Denk, Winfried, Seung, H. Sebastian
Published in Neural computation (01.02.2010)
Published in Neural computation (01.02.2010)
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Journal Article
Local shape descriptors for neuron segmentation
Sheridan, Arlo, Nguyen, Tri M., Deb, Diptodip, Lee, Wei-Chung Allen, Saalfeld, Stephan, Turaga, Srinivas C., Manor, Uri, Funke, Jan
Published in Nature methods (01.02.2023)
Published in Nature methods (01.02.2023)
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Journal Article
Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set
Buhmann, Julia, Sheridan, Arlo, Malin-Mayor, Caroline, Schlegel, Philipp, Gerhard, Stephan, Kazimiers, Tom, Krause, Renate, Nguyen, Tri M., Heinrich, Larissa, Lee, Wei-Chung Allen, Wilson, Rachel, Saalfeld, Stephan, Jefferis, Gregory S. X. E., Bock, Davi D., Turaga, Srinivas C., Cook, Matthew, Funke, Jan
Published in Nature methods (01.07.2021)
Published in Nature methods (01.07.2021)
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Journal Article
Crowdsourcing the creation of image segmentation algorithms for connectomics
Arganda-Carreras, Ignacio, Turaga, Srinivas C, Berger, Daniel R, Cireşan, Dan, Giusti, Alessandro, Gambardella, Luca M, Schmidhuber, Jürgen, Laptev, Dmitry, Dwivedi, Sarvesh, Buhmann, Joachim M, Liu, Ting, Seyedhosseini, Mojtaba, Tasdizen, Tolga, Kamentsky, Lee, Burget, Radim, Uher, Vaclav, Tan, Xiao, Sun, Changming, Pham, Tuan D, Bas, Erhan, Uzunbas, Mustafa G, Cardona, Albert, Schindelin, Johannes, Seung, H Sebastian
Published in Frontiers in neuroanatomy (05.11.2015)
Published in Frontiers in neuroanatomy (05.11.2015)
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Journal Article
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction
Funke, Jan, Tschopp, Fabian, Grisaitis, William, Sheridan, Arlo, Singh, Chandan, Saalfeld, Stephan, Turaga, Srinivas C.
Published in IEEE transactions on pattern analysis and machine intelligence (01.07.2019)
Published in IEEE transactions on pattern analysis and machine intelligence (01.07.2019)
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Journal Article
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
Berens, Philipp, Freeman, Jeremy, Deneux, Thomas, Chenkov, Nikolay, McColgan, Thomas, Speiser, Artur, Macke, Jakob H, Turaga, Srinivas C, Mineault, Patrick, Rupprecht, Peter, Gerhard, Stephan, Friedrich, Rainer W, Friedrich, Johannes, Paninski, Liam, Pachitariu, Marius, Harris, Kenneth D, Bolte, Ben, Machado, Timothy A, Ringach, Dario, Stone, Jasmine, Rogerson, Luke E, Sofroniew, Nicolas J, Reimer, Jacob, Froudarakis, Emmanouil, Euler, Thomas, Román Rosón, Miroslav, Theis, Lucas, Tolias, Andreas S, Bethge, Matthias
Published in PLoS computational biology (01.05.2018)
Published in PLoS computational biology (01.05.2018)
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Journal Article
Deep learning enables fast and dense single-molecule localization with high accuracy
Speiser, Artur, Müller, Lucas-Raphael, Hoess, Philipp, Matti, Ulf, Obara, Christopher J., Legant, Wesley R., Kreshuk, Anna, Macke, Jakob H., Ries, Jonas, Turaga, Srinivas C.
Published in Nature methods (01.09.2021)
Published in Nature methods (01.09.2021)
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Journal Article
Machines that learn to segment images: a crucial technology for connectomics
Jain, Viren, Seung, H Sebastian, Turaga, Srinivas C
Published in Current opinion in neurobiology (01.10.2010)
Published in Current opinion in neurobiology (01.10.2010)
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Journal Article
Connectome-constrained networks predict neural activity across the fly visual system
Lappalainen, Janne K., Tschopp, Fabian D., Prakhya, Sridhama, McGill, Mason, Nern, Aljoscha, Shinomiya, Kazunori, Takemura, Shin-ya, Gruntman, Eyal, Macke, Jakob H., Turaga, Srinivas C.
Published in Nature (London) (31.10.2024)
Published in Nature (London) (31.10.2024)
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Journal Article
Publisher Correction: Deep learning enables fast and dense single-molecule localization with high accuracy
Speiser, Artur, Müller, Lucas-Raphael, Hoess, Philipp, Matti, Ulf, Obara, Christopher J., Legant, Wesley R., Kreshuk, Anna, Macke, Jakob H., Ries, Jonas, Turaga, Srinivas C.
Published in Nature methods (01.11.2021)
Published in Nature methods (01.11.2021)
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Journal Article
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems
Tschopp, Fabian, Martel, Julien N. P., Turaga, Srinivas C., Cook, Matthew, Funke, Jan
Published in 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) (01.04.2016)
Published in 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) (01.04.2016)
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Conference Proceeding
Journal Article
Fly-brain connectome helps to make predictions about neural activity
Published in Nature (London)
(11.09.2024)
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Journal Article
Green fluorescent proteins: Examining the underlying factors of brightness using machine learning
Kidd, Lillian G., Koberstein, John N., Turaga, Srinivas C., Tebo, Alison G.
Published in Biophysical journal (08.02.2024)
Published in Biophysical journal (08.02.2024)
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Journal Article
Opportunities and obstacles for deep learning in biology and medicine
Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Published in Journal of the Royal Society interface (01.04.2018)
Published in Journal of the Royal Society interface (01.04.2018)
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Journal Article