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Published in Cell (14.06.2018)
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The clonal and mutational evolution spectrum of primary triple―negative breast cancers
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Published in Nature (London) (21.06.2012)
Published in Nature (London) (21.06.2012)
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Improved structural variant interpretation for hereditary cancer susceptibility using long-read sequencing
Thibodeau, My Linh, O'Neill, Kieran, Dixon, Katherine, Reisle, Caralyn, Mungall, Karen L, Krzywinski, Martin, Shen, Yaoqing, Lim, Howard J, Cheng, Dean, Tse, Kane, Wong, Tina, Chuah, Eric, Fok, Alexandra, Sun, Sophie, Renouf, Daniel, Schaeffer, David F, Cremin, Carol, Chia, Stephen, Young, Sean, Pandoh, Pawan, Pleasance, Stephen, Pleasance, Erin, Mungall, Andrew J, Moore, Richard, Yip, Stephen, Karsan, Aly, Laskin, Janessa, Marra, Marco A, Schrader, Kasmintan A, Jones, Steven J M
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Frequent mutation of histone―modifying genes in non―Hodgkin lymphoma
MORIN, Ryan D, MENDEZ-LAGO, Maria, JACKMAN, Shaun, KRZYWINSKI, Martin, SCOTT, David W, TRINH, Diane L, TAMURA-WELLS, Jessica, SA LI, FIRME, Marlo R, ROGIC, Sanja, GRIFFITH, Malachi, CHAN, Susanna, MUNGALL, Andrew J, YAKOVENKO, Oleksandr, MEYER, Irmtraud M, ZHAO, Eric Y, SMAILUS, Duane, MOKSA, Michelle, CHITTARANJAN, Suganthi, RIMSZA, Lisa, BROOKS-WILSON, Angela, SPINELLI, John J, BEN-NERIAH, Susana, GOYA, Rodrigo, MEISSNER, Barbara, WOOLCOCK, Bruce, BOYLE, Merrill, MCDONALD, Helen, TAM, Angela, YONGJUN ZHAO, DELANEY, Allen, ZENG, Thomas, TSE, Kane, BUTTERFIELD, Yaron, MUNGALL, Karen L, BIROL, Inanç, HOLT, Rob, SCHEIN, Jacqueline, HORSMAN, Douglas E, MOORE, Richard, JONES, Steven J. M, CONNORS, Joseph M, HIRST, Martin, GASCOYNE, Randy D, MARRA, Marco A, CORBETT, Richard D, JOHNSON, Nathalie A, SEVERSON, Tesa M, CHIU, Readman, FIELD, Matthew
Published in Nature (London) (18.08.2011)
Published in Nature (London) (18.08.2011)
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Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling
Bashashati, Ali, Ha, Gavin, Tone, Alicia, Ding, Jiarui, Prentice, Leah M, Roth, Andrew, Rosner, Jamie, Shumansky, Karey, Kalloger, Steve, Senz, Janine, Yang, Winnie, McConechy, Melissa, Melnyk, Nataliya, Anglesio, Michael, Luk, Margaret TY, Tse, Kane, Zeng, Thomas, Moore, Richard, Zhao, Yongjun, Marra, Marco A, Gilks, Blake, Yip, Stephen, Huntsman, David G, McAlpine, Jessica N, Shah, Sohrab P
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Genetic Alterations Activating Kinase and Cytokine Receptor Signaling in High-Risk Acute Lymphoblastic Leukemia
Roberts, Kathryn G., Morin, Ryan D., Zhang, Jinghui, Hirst, Martin, Zhao, Yongjun, Su, Xiaoping, Chen, Shann-Ching, Payne-Turner, Debbie, Churchman, Michelle L., Harvey, Richard C., Chen, Xiang, Kasap, Corynn, Yan, Chunhua, Becksfort, Jared, Finney, Richard P., Teachey, David T., Maude, Shannon L., Tse, Kane, Moore, Richard, Jones, Steven, Mungall, Karen, Birol, Inanc, Edmonson, Michael N., Hu, Ying, Buetow, Kenneth E., Chen, I-Ming, Carroll, William L., Wei, Lei, Ma, Jing, Kleppe, Maria, Levine, Ross L., Garcia-Manero, Guillermo, Larsen, Eric, Shah, Neil P., Devidas, Meenakshi, Reaman, Gregory, Smith, Malcolm, Paugh, Steven W., Evans, William E., Grupp, Stephan A., Jeha, Sima, Pui, Ching-Hon, Gerhard, Daniela S., Downing, James R., Willman, Cheryl L., Loh, Mignon, Hunger, Stephen P., Marra, Marco A., Mullighan, Charles G.
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Use of mutation profiles to refine the classification of endometrial carcinomas
McConechy, Melissa K, Ding, Jiarui, Cheang, Maggie CU, Wiegand, Kimberly C, Senz, Janine, Tone, Alicia A, Yang, Winnie, Prentice, Leah M, Tse, Kane, Zeng, Thomas, McDonald, Helen, Schmidt, Amy P, Mutch, David G, McAlpine, Jessica N, Hirst, Martin, Shah, Sohrab P, Lee, Cheng-Han, Goodfellow, Paul J, Gilks, C Blake, Huntsman, David G
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The E3 ubiquitin ligase UBR5 is recurrently mutated in mantle cell lymphoma
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Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways
Chun, Hye-Jung E., Lim, Emilia L., Heravi-Moussavi, Alireza, Saberi, Saeed, Mungall, Karen L., Bilenky, Mikhail, Carles, Annaick, Tse, Kane, Shlafman, Inna, Zhu, Kelsey, Qian, Jenny Q., Palmquist, Diana L., He, An, Long, William, Goya, Rodrigo, Ng, Michelle, LeBlanc, Veronique G., Pleasance, Erin, Thiessen, Nina, Wong, Tina, Chuah, Eric, Zhao, Yong-Jun, Schein, Jacquie E., Gerhard, Daniela S., Taylor, Michael D., Mungall, Andrew J., Moore, Richard A., Ma, Yussanne, Jones, Steven J.M., Perlman, Elizabeth J., Hirst, Martin, Marra, Marco A.
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Clonal evolution of high-grade serous ovarian carcinoma from primary to recurrent disease
Castellarin, Mauro, Milne, Katy, Zeng, Thomas, Tse, Kane, Mayo, Michael, Zhao, Yongjun, Webb, John R, Watson, Peter H, Nelson, Brad H, Holt, Robert A
Published in The Journal of pathology (01.03.2013)
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Clonal Analysis via Barcoding Reveals Diverse Growth and Differentiation of Transplanted Mouse and Human Mammary Stem Cells
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Published in Cell stem cell (06.02.2014)
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The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758 [version 2; peer review: 2 approved]
Chang, Glenn, Jones, Samantha, Leelakumari, Sreeja, Ashkani, Jahanshah, Culibrk, Luka, O'Neill, Kieran, Tse, Kane, Cheng, Dean, Chuah, Eric, McDonald, Helen, Kirk, Heather, Pandoh, Pawan, Pari, Sauro, Angelini, Valeria, Kyle, Christopher, Bertorelle, Giorgio, Zhao, Yongjun, Mungall, Andrew, Moore, Richard, Vilaça, Sibelle, Jones, Steven
Published in F1000 research (2023)
Published in F1000 research (2023)
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Complete genomic landscape of a recurring sporadic parathyroid carcinoma
Kasaian, Katayoon, Wiseman, Sam M, Thiessen, Nina, Mungall, Karen L, Corbett, Richard D, Qian, Jenny Q, Nip, Ka Ming, He, Ann, Tse, Kane, Chuah, Eric, Varhol, Richard J, Pandoh, Pawan, McDonald, Helen, Zeng, Thomas, Tam, Angela, Schein, Jacquie, Birol, Inanc, Mungall, Andrew J, Moore, Richard A, Zhao, Yongjun, Hirst, Martin, Marra, Marco A, Walker, Blair A, Jones, Steven JM
Published in The Journal of pathology (01.07.2013)
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The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis
Taylor, Gregory A, Kirk, Heather, Coombe, Lauren, Jackman, Shaun D, Chu, Justin, Tse, Kane, Cheng, Dean, Chuah, Eric, Pandoh, Pawan, Carlsen, Rebecca, Zhao, Yongjun, Mungall, Andrew J, Moore, Richard, Birol, Inanc, Franke, Maria, Marra, Marco A, Dutton, Christopher, Jones, Steven J M
Published in Genes (30.11.2018)
Published in Genes (30.11.2018)
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The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758 [version 1; peer review: 1 approved, 1 approved with reservations]
Chang, Glenn, Jones, Samantha, Leelakumari, Sreeja, Ashkani, Jahanshah, Culibrk, Luka, O'Neill, Kieran, Tse, Kane, Cheng, Dean, Chuah, Eric, McDonald, Helen, Kirk, Heather, Pandoh, Pawan, Pari, Sauro, Angelini, Valeria, Kyle, Christopher, Bertorelle, Giorgio, Zhao, Yongjun, Mungall, Andrew, Moore, Richard, Vilaça, Sibelle, Jones, Steven
Published in F1000 research (2023)
Published in F1000 research (2023)
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The Genome of the Beluga Whale (Delphinapterus leucas)
Jones, Steven J M, Taylor, Gregory A, Chan, Simon, Warren, René L, Hammond, S Austin, Bilobram, Steven, Mordecai, Gideon, Suttle, Curtis A, Miller, Kristina M, Schulze, Angela, Chan, Amy M, Jones, Samantha J, Tse, Kane, Li, Irene, Cheung, Dorothy, Mungall, Karen L, Choo, Caleb, Ally, Adrian, Dhalla, Noreen, Tam, Angela K Y, Troussard, Armelle, Kirk, Heather, Pandoh, Pawan, Paulino, Daniel, Coope, Robin J N, Mungall, Andrew J, Moore, Richard, Zhao, Yongjun, Birol, Inanc, Ma, Yussanne, Marra, Marco, Haulena, Martin
Published in Genes (11.12.2017)
Published in Genes (11.12.2017)
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The Genome of the Steller Sea Lion ( Eumetopias jubatus )
Kwan, Harwood H, Culibrk, Luka, Taylor, Gregory A, Leelakumari, Sreeja, Tan, Ryan, Jackman, Shaun D, Tse, Kane, MacLeod, Tina, Cheng, Dean, Chuah, Eric, Kirk, Heather, Pandoh, Pawan, Carlsen, Rebecca, Zhao, Yongjun, Mungall, Andrew J, Moore, Richard, Birol, Inanc, Marra, Marco A, Rosen, David A S, Haulena, Martin, Jones, Steven J M
Published in Genes (26.06.2019)
Published in Genes (26.06.2019)
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Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors
Crisan, Anamaria, Goya, Rodrigo, Ha, Gavin, Ding, Jiarui, Prentice, Leah M, Oloumi, Arusha, Senz, Janine, Zeng, Thomas, Tse, Kane, Delaney, Allen, Marra, Marco A, Huntsman, David G, Hirst, Martin, Aparicio, Sam, Shah, Sohrab
Published in PloS one (16.08.2012)
Published in PloS one (16.08.2012)
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Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer
Kim, Jaegil, Bellmunt, Joaquim, Cherniack, Andrew D., Hinoue, Toshinori, Hoadley, Katherine A., Gibb, Ewan A., Shukla, Sachet A., Sanchez-Vega, Francisco, Reuter, Victor E., Sadeghi, Sara, Pedamallu, Chandra Sekhar, Lu, Yiling, Klimczak, Leszek J., Zhang, Jiexin, Choo, Caleb, Leraas, Kristen M., Lichtenberg, Tara M., Schultz, Nicholaus, Getz, Gad, Mills, Gordon B., Al-Ahmadie, Hikmat, Alexopoulou, Iakovina, Ally, Adrian, Beaver, Allison, Bellmunt, Joaquim, Boice, Lori, Bootwalla, Moiz S., Bowen, Jay, Brooks, Denise, Broom, Bradley M., Bshara, Wiam, Bullman, Susan, Burks, Eric, Carvalho, Benilton S., Carvalho, Andre L., Castro, Mauro A.A., Chagas, Vinicius S., Cherniack, Andrew D., Cortessis, Victoria K., Czerniak, Bogdan A., Daneshmand, Siamak, Dhalla, Noreen, Egea, Sophie C., Engel, Jay, Felau, Ina, Gastier-Foster, Julie M., Getz, Gad, Gordenin, Dmitry A., Hansel, Donna E., Harr, Jodi, Hartmann, Arndt, Hinoue, Toshinori, Jones, Steven J.M., Kahnoski, Richard J., Kasaian, Katayoon, Lai, Phillip H., Lane, Brian R., Liu, Jia, Lolla, Laxmi, Lotan, Yair, Lu, Yiling, Lucchesi, Fabiano R., Mallery, David, Marra, Marco A., Mills, Gordon B., Mungall, Karen L., Ojesina, Akinyemi I., Parekh, Dipen J., Sekhar Pedamallu, Chandra, Pihl, Todd, Rathmell, W. Kimryn, Robertson, A. Gordon, Sadeghi, Sara, Saller, Charles, Salner, Andrew, Sanchez-Vega, Francisco, Scapulatempo-Neto, Cristovam, Schuckman, Anne K., Shukla, Sachet A., Simko, Jeff, Sipahimalani, Payal, Sorcini, Andrea, Stoehr, Robert, Su, Xiaoping, Tarnuzzer, Roy, Thiessen, Nina, Thorne, Leigh, Tse, Kane, Wach, Sven, Wang, Zhining, Weinstein, John N., Wise, Lisa, Wong, Tina, Wu, Ye, Zach, Leigh Anne, Zenklusen, Jean C., Zhang, Jiashan (Julia), Zhang, Jiexin, Zwarthoff, Ellen C., Weinstein, John N.
Published in Cell (19.10.2017)
Published in Cell (19.10.2017)
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The whole-genome landscape of medulloblastoma subtypes
Northcott, Paul A, Buchhalter, Ivo, Morrissy, A Sorana, Hovestadt, Volker, Weischenfeldt, Joachim, Ehrenberger, Tobias, Gröbner, Susanne, Segura-Wang, Maia, Zichner, Thomas, Rudneva, Vasilisa A, Warnatz, Hans-Jörg, Sidiropoulos, Nikos, Phillips, Aaron H, Schumacher, Steven, Kleinheinz, Kortine, Waszak, Sebastian M, Erkek, Serap, Jones, David T W, Worst, Barbara C, Kool, Marcel, Zapatka, Marc, Jäger, Natalie, Chavez, Lukas, Hutter, Barbara, Bieg, Matthias, Paramasivam, Nagarajan, Heinold, Michael, Gu, Zuguang, Ishaque, Naveed, Jäger-Schmidt, Christina, Imbusch, Charles D, Jugold, Alke, Hübschmann, Daniel, Risch, Thomas, Amstislavskiy, Vyacheslav, Gonzalez, Francisco German Rodriguez, Weber, Ursula D, Wolf, Stephan, Robinson, Giles W, Zhou, Xin, Wu, Gang, Finkelstein, David, Liu, Yanling, Cavalli, Florence M G, Luu, Betty, Ramaswamy, Vijay, Wu, Xiaochong, Koster, Jan, Ryzhova, Marina, Cho, Yoon-Jae, Pomeroy, Scott L, Herold-Mende, Christel, Schuhmann, Martin, Ebinger, Martin, Liau, Linda M, Mora, Jaume, McLendon, Roger E, Jabado, Nada, Kumabe, Toshihiro, Chuah, Eric, Ma, Yussanne, Moore, Richard A, Mungall, Andrew J, Mungall, Karen L, Thiessen, Nina, Tse, Kane, Wong, Tina, Jones, Steven J M, Witt, Olaf, Milde, Till, Von Deimling, Andreas, Capper, David, Korshunov, Andrey, Yaspo, Marie-Laure, Kriwacki, Richard, Gajjar, Amar, Zhang, Jinghui, Beroukhim, Rameen, Fraenkel, Ernest, Korbel, Jan O, Brors, Benedikt, Schlesner, Matthias, Eils, Roland, Marra, Marco A, Pfister, Stefan M, Taylor, Michael D, Lichter, Peter
Published in Nature (London) (20.07.2017)
Published in Nature (London) (20.07.2017)
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