Airway Microbiota Is Associated with Upregulation of the PI3K Pathway in Lung Cancer
Tsay, Jun-Chieh J, Wu, Benjamin G, Badri, Michelle H, Clemente, Jose C, Shen, Nan, Meyn, Peter, Li, Yonghua, Yie, Ting-An, Lhakhang, Tenzin, Olsen, Evan, Murthy, Vivek, Michaud, Gaetane, Sulaiman, Imran, Tsirigos, Aristotelis, Heguy, Adriana, Pass, Harvey, Weiden, Michael D, Rom, William N, Sterman, Daniel H, Bonneau, Richard, Blaser, Martin J, Segal, Leopoldo N
Published in American journal of respiratory and critical care medicine (01.11.2018)
Published in American journal of respiratory and critical care medicine (01.11.2018)
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Journal Article
Lower Airway Dysbiosis Affects Lung Cancer Progression
Tsay, Jun-Chieh J, Wu, Benjamin G, Sulaiman, Imran, Gershner, Katherine, Schluger, Rosemary, Li, Yonghua, Yie, Ting-An, Meyn, Peter, Olsen, Evan, Perez, Luisannay, Franca, Brendan, Carpenito, Joseph, Iizumi, Tadasu, El-Ashmawy, Mariam, Badri, Michelle, Morton, James T, Shen, Nan, He, Linchen, Michaud, Gaetane, Rafeq, Samaan, Bessich, Jamie L, Smith, Robert L, Sauthoff, Harald, Felner, Kevin, Pillai, Ray, Zavitsanou, Anastasia-Maria, Koralov, Sergei B, Mezzano, Valeria, Loomis, Cynthia A, Moreira, Andre L, Moore, William, Tsirigos, Aristotelis, Heguy, Adriana, Rom, William N, Sterman, Daniel H, Pass, Harvey I, Clemente, Jose C, Li, Huilin, Bonneau, Richard, Wong, Kwok-Kin, Papagiannakopoulos, Thales, Segal, Leopoldo N
Published in Cancer discovery (01.02.2021)
Published in Cancer discovery (01.02.2021)
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Journal Article
A Panel of Novel Detection and Prognostic Methylated DNA Markers in Primary Non-Small Cell Lung Cancer and Serum DNA
Ooki, Akira, Maleki, Zahra, Tsay, Jun-Chieh J, Goparaju, Chandra, Brait, Mariana, Turaga, Nitesh, Nam, Hae-Seong, Rom, William N, Pass, Harvey I, Sidransky, David, Guerrero-Preston, Rafael, Hoque, Mohammad Obaidul
Published in Clinical cancer research (15.11.2017)
Published in Clinical cancer research (15.11.2017)
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Journal Article
Episodic Aspiration with Oral Commensals Induces a MyD88-dependent, Pulmonary T-Helper Cell Type 17 Response that Mitigates Susceptibility to Streptococcus pneumoniae
Wu, Benjamin G, Sulaiman, Imran, Tsay, Jun-Chieh J, Perez, Luisanny, Franca, Brendan, Li, Yonghua, Wang, Jing, Gonzalez, Amber N, El-Ashmawy, Mariam, Carpenito, Joseph, Olsen, Evan, Sauthoff, Maya, Yie, Kevin, Liu, Xiuxiu, Shen, Nan, Clemente, Jose C, Kapoor, Bianca, Zangari, Tonia, Mezzano, Valeria, Loomis, Cynthia, Weiden, Michael D, Koralov, Sergei B, D'Armiento, Jeanine, Ahuja, Sunil K, Wu, Xue-Ru, Weiser, Jeffrey N, Segal, Leopoldo N
Published in American journal of respiratory and critical care medicine (01.05.2021)
Published in American journal of respiratory and critical care medicine (01.05.2021)
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Journal Article
Controversies and challenges in lung cancer screening
Rampariag, Ravindra, Chernyavskiy, Igor, Al-Ajam, Mohammad, Tsay, Jun-Chieh J.
Published in Seminars in oncology (01.06.2022)
Published in Seminars in oncology (01.06.2022)
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Journal Article
Epigenetically regulated PAX6 drives cancer cells toward a stem-like state via GLI-SOX2 signaling axis in lung adenocarcinoma
Ooki, Akira, Dinalankara, Wikum, Marchionni, Luigi, Tsay, Jun-Chieh J., Goparaju, Chandra, Maleki, Zahra, Rom, William N., Pass, Harvey I., Hoque, Mohammad O.
Published in Oncogene (01.11.2018)
Published in Oncogene (01.11.2018)
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Journal Article
Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype
Segal, Leopoldo N., Clemente, Jose C., Tsay, Jun-Chieh J., Koralov, Sergei B., Keller, Brian C., Wu, Benjamin G., Li, Yonghua, Shen, Nan, Ghedin, Elodie, Morris, Alison, Diaz, Phillip, Huang, Laurence, Wikoff, William R., Ubeda, Carles, Artacho, Alejandro, Rom, William N., Sterman, Daniel H., Collman, Ronald G., Blaser, Martin J., Weiden, Michael D.
Published in Nature microbiology (04.04.2016)
Published in Nature microbiology (04.04.2016)
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Journal Article
Autoantibodies against tumor-associated antigens in the early detection of lung cancer
Dai, Liping, Tsay, Jun-Chieh J, Li, Jitian, Yie, Ting-An, Munger, John S, Pass, Harvey, Rom, William N, Zhang, Yi, Tan, Eng M, Zhang, Jian-Ying
Published in Lung cancer (Amsterdam, Netherlands) (01.09.2016)
Published in Lung cancer (Amsterdam, Netherlands) (01.09.2016)
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Journal Article
The lung microbiome, peripheral gene expression, and recurrence-free survival after resection of stage II non-small cell lung cancer
Peters, Brandilyn A, Pass, Harvey I, Burk, Robert D, Xue, Xiaonan, Goparaju, Chandra, Sollecito, Christopher C, Grassi, Evan, Segal, Leopoldo N, Tsay, Jun-Chieh J, Hayes, Richard B, Ahn, Jiyoung
Published in Genome medicine (27.10.2022)
Published in Genome medicine (27.10.2022)
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Journal Article
Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease
Sulaiman, Imran, Wu, Benjamin G, Chung, Matthew, Isaacs, Bradley, Tsay, Jun-Chieh J, Holub, Meredith, Barnett, Clea R, Kwok, Benjamin, Kugler, Matthias C, Natalini, Jake G, Singh, Shivani, Li, Yonghua, Schluger, Rosemary, Carpenito, Joseph, Collazo, Destiny, Perez, Luisanny, Kyeremateng, Yaa, Chang, Miao, Campbell, Christina D, Hansbro, Philip M, Oppenheimer, Beno W, Berger, Kenneth I, Goldring, Roberta M, Koralov, Sergei B, Weiden, Michael D, Xiao, Rui, D'Armiento, Jeanine, Clemente, Jose C, Ghedin, Elodie, Segal, Leopoldo N
Published in American journal of respiratory and critical care medicine (15.11.2023)
Published in American journal of respiratory and critical care medicine (15.11.2023)
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Journal Article
Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
Dolgalev, Igor, Zhou, Hua, Murrell, Nina, Le, Hortense, Sakellaropoulos, Theodore, Coudray, Nicolas, Zhu, Kelsey, Vasudevaraja, Varshini, Yeaton, Anna, Goparaju, Chandra, Li, Yonghua, Sulaiman, Imran, Tsay, Jun-Chieh J., Meyn, Peter, Mohamed, Hussein, Sydney, Iris, Shiomi, Tomoe, Ramaswami, Sitharam, Narula, Navneet, Kulicke, Ruth, Davis, Fred P., Stransky, Nicolas, Smolen, Gromoslaw A., Cheng, Wei-Yi, Cai, James, Punekar, Salman, Velcheti, Vamsidhar, Sterman, Daniel H., Poirier, J. T., Neel, Ben, Wong, Kwok-Kin, Chiriboga, Luis, Heguy, Adriana, Papagiannakopoulos, Thales, Nadorp, Bettina, Snuderl, Matija, Segal, Leopoldo N., Moreira, Andre L., Pass, Harvey I., Tsirigos, Aristotelis
Published in Nature communications (08.11.2023)
Published in Nature communications (08.11.2023)
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Journal Article
Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome
Sulaiman, Imran, Chung, Matthew, Angel, Luis, Tsay, Jun-Chieh J., Wu, Benjamin G., Yeung, Stephen T., Krolikowski, Kelsey, Li, Yonghua, Duerr, Ralf, Schluger, Rosemary, Thannickal, Sara A., Koide, Akiko, Rafeq, Samaan, Barnett, Clea, Postelnicu, Radu, Wang, Chang, Banakis, Stephanie, Pérez-Pérez, Lizzette, Shen, Guomiao, Jour, George, Meyn, Peter, Carpenito, Joseph, Liu, Xiuxiu, Ji, Kun, Collazo, Destiny, Labarbiera, Anthony, Amoroso, Nancy, Brosnahan, Shari, Mukherjee, Vikramjit, Kaufman, David, Bakker, Jan, Lubinsky, Anthony, Pradhan, Deepak, Sterman, Daniel H., Weiden, Michael, Heguy, Adriana, Evans, Laura, Uyeki, Timothy M., Clemente, Jose C., de Wit, Emmie, Schmidt, Ann Marie, Shopsin, Bo, Desvignes, Ludovic, Wang, Chan, Li, Huilin, Zhang, Bin, Forst, Christian V., Koide, Shohei, Stapleford, Kenneth A., Khanna, Kamal M., Ghedin, Elodie, Segal, Leopoldo N.
Published in Nature microbiology (01.10.2021)
Published in Nature microbiology (01.10.2021)
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Journal Article
Pleural fluid microbiota as a biomarker for malignancy and prognosis
Kwok, Benjamin, Wu, Benjamin G., Kocak, Ibrahim F., Sulaiman, Imran, Schluger, Rosemary, Li, Yonghua, Anwer, Raheel, Goparaju, Chandra, Ryan, Daniel J., Sagatelian, Marla, Dreier, Matthew S., Murthy, Vivek, Rafeq, Samaan, Michaud, Gaetane C., Sterman, Daniel H., Bessich, Jamie L., Pass, Harvey I., Segal, Leopoldo N., Tsay, Jun-Chieh J.
Published in Scientific reports (08.02.2023)
Published in Scientific reports (08.02.2023)
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Journal Article
A Gene Expression Classifier from Whole Blood Distinguishes Benign from Malignant Lung Nodules Detected by Low-Dose CT
Kossenkov, Andrew V, Qureshi, Rehman, Dawany, Noor B, Wickramasinghe, Jayamanna, Liu, Qin, Majumdar, R Sonali, Chang, Celia, Widura, Sandy, Kumar, Trisha, Horng, Wen-Hwai, Konnisto, Eric, Criner, Gerard, Tsay, Jun-Chieh J, Pass, Harvey, Yendamuri, Sai, Vachani, Anil, Bauer, Thomas, Nam, Brian, Rom, William N, Showe, Michael K, Showe, Louise C
Published in Cancer research (Chicago, Ill.) (01.01.2019)
Published in Cancer research (Chicago, Ill.) (01.01.2019)
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Journal Article
Comparative Study of Autoantibody Responses between Lung Adenocarcinoma and Benign Pulmonary Nodules
Wang, Jie, Shivakumar, Shilpa, Barker, Kristi, Tang, Yanyang, Wallstrom, Garrick, Park, Jin G., Tsay, Jun-Chieh J., Pass, Harvey I., Rom, William N., LaBaer, Joshua, Qiu, Ji
Published in Journal of thoracic oncology (01.03.2016)
Published in Journal of thoracic oncology (01.03.2016)
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Journal Article
Identification of autoantibodies to ECH1 and HNRNPA2B1 as potential biomarkers in the early detection of lung cancer
Dai, Liping, Li, Jitian, Tsay, Jun-Chieh J., Yie, Ting-An, Munger, John S., Pass, Harvey, Rom, William N., Tan, Eng M., Zhang, Jian-Ying
Published in Oncoimmunology (04.05.2017)
Published in Oncoimmunology (04.05.2017)
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Journal Article
Value of metalloproteinases in predicting COPD in heavy urban smokers
Tsay, Jun-Chieh J, Hu, Yingjie, Goldberg, Judith D, Wang, Bin, Vijayalekshmy, Soumya, Yie, Ting-An, Bantis, Katrina, Sterman, Daniel H, Rom, William N
Published in Respiratory research (02.09.2020)
Published in Respiratory research (02.09.2020)
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Journal Article
Tumor-draining lymph nodes demonstrate a suppressive immunophenotype in patients with non-small cell lung cancer assessed by endobronchial ultrasound-guided transbronchial needle aspiration: A pilot study
Murthy, Vivek, Katzman, Daniel P., Tsay, Jun-Chieh J., Bessich, Jamie L., Michaud, Gaetane C., Rafeq, Samaan, Minehart, Janna, Mangalick, Keshav, de Lafaille, M. A. Curotto, Goparaju, Chandra, Pass, Harvey, Sterman, Daniel H.
Published in Lung cancer (Amsterdam, Netherlands) (01.11.2019)
Published in Lung cancer (Amsterdam, Netherlands) (01.11.2019)
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Journal Article
Molecular characterization of the peripheral airway field of cancerization in lung adenocarcinoma
Tsay, Jun-Chieh J, Li, Zhiguo, Yie, Ting-An, Wu, Feng, Segal, Leopoldo, Greenberg, Alissa K, Leibert, Eric, Weiden, Michael D, Pass, Harvey, Munger, John, Statnikov, Alexander, Tchou-Wong, Kam-Meng, Rom, William N
Published in PloS one (23.02.2015)
Published in PloS one (23.02.2015)
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Journal Article