Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
Despang, Alexandra, Schöpflin, Robert, Franke, Martin, Ali, Salaheddine, Jerković, Ivana, Paliou, Christina, Chan, Wing-Lee, Timmermann, Bernd, Wittler, Lars, Vingron, Martin, Mundlos, Stefan, Ibrahim, Daniel M.
Published in Nature genetics (01.08.2019)
Published in Nature genetics (01.08.2019)
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Single-cell sequencing of human midbrain reveals glial activation and a Parkinson-specific neuronal state
Smajić, Semra, Prada-Medina, Cesar A, Landoulsi, Zied, Ghelfi, Jenny, Delcambre, Sylvie, Dietrich, Carola, Jarazo, Javier, Henck, Jana, Balachandran, Saranya, Pachchek, Sinthuja, Morris, Christopher M, Antony, Paul, Timmermann, Bernd, Sauer, Sascha, Pereira, Sandro L, Schwamborn, Jens C, May, Patrick, Grünewald, Anne, Spielmann, Malte
Published in Brain (London, England : 1878) (29.04.2022)
Published in Brain (London, England : 1878) (29.04.2022)
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An Unbiased Molecular Approach Using 3′-UTRs Resolves the Avian Family-Level Tree of Life
Kuhl, Heiner, Frankl-Vilches, Carolina, Bakker, Antje, Mayr, Gerald, Nikolaus, Gerhard, Boerno, Stefan T, Klages, Sven, Timmermann, Bernd, Gahr, Manfred
Published in Molecular biology and evolution (04.01.2021)
Published in Molecular biology and evolution (04.01.2021)
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Journal Article
Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors
Koch, Frederic, Scholze, Manuela, Wittler, Lars, Schifferl, Dennis, Sudheer, Smita, Grote, Phillip, Timmermann, Bernd, Macura, Karol, Herrmann, Bernhard G.
Published in Developmental cell (11.09.2017)
Published in Developmental cell (11.09.2017)
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Journal Article
Formation of new chromatin domains determines pathogenicity of genomic duplications
Franke, Martin, Ibrahim, Daniel M., Andrey, Guillaume, Schwarzer, Wibke, Heinrich, Verena, Schöpflin, Robert, Kraft, Katerina, Kempfer, Rieke, Jerković, Ivana, Chan, Wing-Lee, Spielmann, Malte, Timmermann, Bernd, Wittler, Lars, Kurth, Ingo, Cambiaso, Paola, Zuffardi, Orsetta, Houge, Gunnar, Lambie, Lindsay, Brancati, Francesco, Pombo, Ana, Vingron, Martin, Spitz, Francois, Mundlos, Stefan
Published in Nature (London) (13.10.2016)
Published in Nature (London) (13.10.2016)
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Journal Article
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
Lupiáñez, Darío G., Kraft, Katerina, Heinrich, Verena, Krawitz, Peter, Brancati, Francesco, Klopocki, Eva, Horn, Denise, Kayserili, Hülya, Opitz, John M., Laxova, Renata, Santos-Simarro, Fernando, Gilbert-Dussardier, Brigitte, Wittler, Lars, Borschiwer, Marina, Haas, Stefan A., Osterwalder, Marco, Franke, Martin, Timmermann, Bernd, Hecht, Jochen, Spielmann, Malte, Visel, Axel, Mundlos, Stefan
Published in Cell (21.05.2015)
Published in Cell (21.05.2015)
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Wild tobacco genomes reveal the evolution of nicotine biosynthesis
Xu, Shuqing, Brockmöller, Thomas, Navarro-Quezada, Aura, Kuhl, Heiner, Gase, Klaus, Ling, Zhihao, Zhou, Wenwu, Kreitzer, Christoph, Stanke, Mario, Tang, Haibao, Lyons, Eric, Pandey, Priyanka, Pandey, Shree P., Timmermann, Bernd, Gaquerel, Emmanuel, Baldwin, Ian T.
Published in Proceedings of the National Academy of Sciences - PNAS (06.06.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (06.06.2017)
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Journal Article
Genetics of intellectual disability in consanguineous families
Hu, Hao, Kahrizi, Kimia, Musante, Luciana, Fattahi, Zohreh, Herwig, Ralf, Hosseini, Masoumeh, Oppitz, Cornelia, Abedini, Seyedeh Sedigheh, Suckow, Vanessa, Larti, Farzaneh, Beheshtian, Maryam, Lipkowitz, Bettina, Akhtarkhavari, Tara, Mehvari, Sepideh, Otto, Sabine, Mohseni, Marzieh, Arzhangi, Sanaz, Jamali, Payman, Mojahedi, Faezeh, Taghdiri, Maryam, Papari, Elaheh, Soltani Banavandi, Mohammad Javad, Akbari, Saeide, Tonekaboni, Seyed Hassan, Dehghani, Hossein, Ebrahimpour, Mohammad Reza, Bader, Ingrid, Davarnia, Behzad, Cohen, Monika, Khodaei, Hossein, Albrecht, Beate, Azimi, Sarah, Zirn, Birgit, Bastami, Milad, Wieczorek, Dagmar, Bahrami, Gholamreza, Keleman, Krystyna, Vahid, Leila Nouri, Tzschach, Andreas, Gärtner, Jutta, Gillessen-Kaesbach, Gabriele, Varaghchi, Jamileh Rezazadeh, Timmermann, Bernd, Pourfatemi, Fatemeh, Jankhah, Aria, Chen, Wei, Nikuei, Pooneh, Kalscheuer, Vera M., Oladnabi, Morteza, Wienker, Thomas F., Ropers, Hans-Hilger, Najmabadi, Hossein
Published in Molecular psychiatry (01.07.2019)
Published in Molecular psychiatry (01.07.2019)
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Dnmt1 has de novo activity targeted to transposable elements
Haggerty, Chuck, Kretzmer, Helene, Riemenschneider, Christina, Kumar, Abhishek Sampath, Mattei, Alexandra L., Bailly, Nina, Gottfreund, Judith, Giesselmann, Pay, Weigert, Raha, Brändl, Björn, Giehr, Pascal, Buschow, René, Galonska, Christina, von Meyenn, Ferdinand, Pappalardi, Melissa B., McCabe, Michael T., Wittler, Lars, Giesecke-Thiel, Claudia, Mielke, Thorsten, Meierhofer, David, Timmermann, Bernd, Müller, Franz-Josef, Walter, Jörn, Meissner, Alexander
Published in Nature structural & molecular biology (01.07.2021)
Published in Nature structural & molecular biology (01.07.2021)
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Journal Article
Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
Andrey, Guillaume, Schöpflin, Robert, Jerković, Ivana, Heinrich, Verena, Ibrahim, Daniel M, Paliou, Christina, Hochradel, Myriam, Timmermann, Bernd, Haas, Stefan, Vingron, Martin, Mundlos, Stefan
Published in Genome research (01.02.2017)
Published in Genome research (01.02.2017)
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Journal Article
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
Kragesteen, Bjørt K., Spielmann, Malte, Paliou, Christina, Heinrich, Verena, Schöpflin, Robert, Esposito, Andrea, Annunziatella, Carlo, Bianco, Simona, Chiariello, Andrea M., Jerković, Ivana, Harabula, Izabela, Guckelberger, Philine, Pechstein, Michael, Wittler, Lars, Chan, Wing-Lee, Franke, Martin, Lupiáñez, Darío G., Kraft, Katerina, Timmermann, Bernd, Vingron, Martin, Visel, Axel, Nicodemi, Mario, Mundlos, Stefan, Andrey, Guillaume
Published in Nature genetics (01.10.2018)
Published in Nature genetics (01.10.2018)
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Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria
Philippe, Hervé, Poustka, Albert J., Chiodin, Marta, Hoff, Katharina J., Dessimoz, Christophe, Tomiczek, Bartlomiej, Schiffer, Philipp H., Müller, Steven, Domman, Daryl, Horn, Matthias, Kuhl, Heiner, Timmermann, Bernd, Satoh, Noriyuki, Hikosaka-Katayama, Tomoe, Nakano, Hiroaki, Rowe, Matthew L., Elphick, Maurice R., Thomas-Chollier, Morgane, Hankeln, Thomas, Mertes, Florian, Wallberg, Andreas, Rast, Jonathan P., Copley, Richard R., Martinez, Pedro, Telford, Maximilian J.
Published in Current biology (03.06.2019)
Published in Current biology (03.06.2019)
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Genome-wide tracking of dCas9-methyltransferase footprints
Galonska, Christina, Charlton, Jocelyn, Mattei, Alexandra L., Donaghey, Julie, Clement, Kendell, Gu, Hongcang, Mohammad, Arman W., Stamenova, Elena K., Cacchiarelli, Davide, Klages, Sven, Timmermann, Bernd, Cantz, Tobias, Schöler, Hans R., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Published in Nature communications (09.02.2018)
Published in Nature communications (09.02.2018)
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Journal Article
Protein interaction perturbation profiling at amino-acid resolution
Woodsmith, Jonathan, Apelt, Luise, Casado-Medrano, Victoria, Özkan, Ziya, Timmermann, Bernd, Stelzl, Ulrich
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
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Journal Article
Hijacking of transcriptional condensates by endogenous retroviruses
Asimi, Vahid, Sampath Kumar, Abhishek, Niskanen, Henri, Riemenschneider, Christina, Hetzel, Sara, Naderi, Julian, Fasching, Nina, Popitsch, Niko, Du, Manyu, Kretzmer, Helene, Smith, Zachary D., Weigert, Raha, Walther, Maria, Mamde, Sainath, Meierhofer, David, Wittler, Lars, Buschow, René, Timmermann, Bernd, Cisse, Ibrahim I., Ameres, Stefan L., Meissner, Alexander, Hnisz, Denes
Published in Nature genetics (01.08.2022)
Published in Nature genetics (01.08.2022)
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Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency
Adachi, Kenjiro, Kopp, Wolfgang, Wu, Guangming, Heising, Sandra, Greber, Boris, Stehling, Martin, Araúzo-Bravo, Marcos J., Boerno, Stefan T., Timmermann, Bernd, Vingron, Martin, Schöler, Hans R.
Published in Cell stem cell (02.08.2018)
Published in Cell stem cell (02.08.2018)
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Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development
Vallecillo-García, Pedro, Orgeur, Mickael, vom Hofe-Schneider, Sophie, Stumm, Jürgen, Kappert, Verena, Ibrahim, Daniel M., Börno, Stefan T., Hayashi, Shinichiro, Relaix, Frédéric, Hildebrandt, Katrin, Sengle, Gerhard, Koch, Manuel, Timmermann, Bernd, Marazzi, Giovanna, Sassoon, David A., Duprez, Delphine, Stricker, Sigmar
Published in Nature communications (31.10.2017)
Published in Nature communications (31.10.2017)
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Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution
Pacini, Guido, Dunkel, Ilona, Mages, Norbert, Mutzel, Verena, Timmermann, Bernd, Marsico, Annalisa, Schulz, Edda G.
Published in Nature communications (15.06.2021)
Published in Nature communications (15.06.2021)
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Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
Chavez, Lukas, Jozefczuk, Justyna, Grimm, Christina, Dietrich, Jörn, Timmermann, Bernd, Lehrach, Hans, Herwig, Ralf, Adjaye, James
Published in Genome research (01.10.2010)
Published in Genome research (01.10.2010)
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Neurofibromin 1 controls metabolic balance and Notch-dependent quiescence of murine juvenile myogenic progenitors
Wei, Xiaoyan, Rigopoulos, Angelos, Lienhard, Matthias, Pöhle-Kronawitter, Sophie, Kotsaris, Georgios, Franke, Julia, Berndt, Nikolaus, Mejedo, Joy Orezimena, Wu, Hao, Börno, Stefan, Timmermann, Bernd, Murgai, Arunima, Glauben, Rainer, Stricker, Sigmar
Published in Nature communications (15.02.2024)
Published in Nature communications (15.02.2024)
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