Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
Li, Bing, Yang, Ying, Ma, Liping, Ju, Feng, Guo, Feng, Tiedje, James M, Zhang, Tong
Published in The ISME Journal (01.11.2015)
Published in The ISME Journal (01.11.2015)
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Journal Article
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming
Xue, Kai, M. Yuan, Mengting, J. Shi, Zhou, Qin, Yujia, Deng, Ye, Cheng, Lei, Wu, Liyou, He, Zhili, Van Nostrand, Joy D., Bracho, Rosvel, Natali, Susan, Schuur, Edward. A. G., Luo, Chengwei, Konstantinidis, Konstantinos T., Wang, Qiong, Cole, James R., Tiedje, James M., Luo, Yiqi, Zhou, Jizhong
Published in Nature climate change (01.06.2016)
Published in Nature climate change (01.06.2016)
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The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
Rodriguez-R, Luis M, Gunturu, Santosh, Harvey, William T, Rosselló-Mora, Ramon, Tiedje, James M, Cole, James R, Konstantinidis, Konstantinos T
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
Gillings, Michael R, Gaze, William H, Pruden, Amy, Smalla, Kornelia, Tiedje, James M, Zhu, Yong-Guan
Published in The ISME Journal (01.06.2015)
Published in The ISME Journal (01.06.2015)
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Journal Article
Diverse and abundant antibiotic resistance genes in Chinese swine farms
Zhu, Yong-Guan, Johnson, Timothy A., Su, Jian-Qiang, Qiao, Min, Guo, Guang-Xia, Stedtfeld, Robert D., Hashsham, Syed A., Tiedje, James M.
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (26.02.2013)
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Journal Article
An omics-based framework for assessing the health risk of antimicrobial resistance genes
Zhang, An-Ni, Gaston, Jeffry M., Dai, Chengzhen L., Zhao, Shijie, Poyet, Mathilde, Groussin, Mathieu, Yin, Xiaole, Li, Li-Guan, van Loosdrecht, Mark C. M., Topp, Edward, Gillings, Michael R., Hanage, William P., Tiedje, James M., Moniz, Katya, Alm, Eric J., Zhang, Tong
Published in Nature communications (06.08.2021)
Published in Nature communications (06.08.2021)
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Journal Article
FunGene: the functional gene pipeline and repository
Fish, Jordan A, Chai, Benli, Wang, Qiong, Sun, Yanni, Brown, C Titus, Tiedje, James M, Cole, James R
Published in Frontiers in microbiology (2013)
Published in Frontiers in microbiology (2013)
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Journal Article
Ribosomal Database Project: data and tools for high throughput rRNA analysis
Cole, James R, Wang, Qiong, Fish, Jordan A, Chai, Benli, McGarrell, Donna M, Sun, Yanni, Brown, C Titus, Porras-Alfaro, Andrea, Kuske, Cheryl R, Tiedje, James M
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
Zhou, Jizhong, Deng, Ye, Zhang, Ping, Xue, Kai, Liang, Yuting, Van Nostrand, Joy D, Yang, Yunfeng, He, Zhili, Wu, Liyou, Stahl, David A, Hazen, Terry C, Tiedje, James M, Arkin, Adam P
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (04.03.2014)
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Journal Article
Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes
Robertson, G. Philip, Hamilton, Stephen K., Barham, Bradford L., Dale, Bruce E., Izaurralde, R. Cesar, Jackson, Randall D., Landis, Douglas A., Swinton, Scott M., Thelen, Kurt D., Tiedje, James M.
Published in Science (American Association for the Advancement of Science) (30.06.2017)
Published in Science (American Association for the Advancement of Science) (30.06.2017)
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Journal Article
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant
Karkman, Antti, Johnson, Timothy A., Lyra, Christina, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko
Published in FEMS microbiology ecology (01.03.2016)
Published in FEMS microbiology ecology (01.03.2016)
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Journal Article
Bioaccumulation of Manure-borne antibiotic resistance genes in carrot and its exposure assessment
Mei, Zhi, Xiang, Leilei, Wang, Fang, Xu, Min, Fu, Yuhao, Wang, Ziquan, Hashsham, Syed A., Jiang, Xin, Tiedje, James M.
Published in Environment international (01.12.2021)
Published in Environment international (01.12.2021)
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Journal Article
Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems
Qian, Xun, Gunturu, Santosh, Guo, Jiarong, Chai, Benli, Cole, James R, Gu, Jie, Tiedje, James M
Published in Microbiome (14.05.2021)
Published in Microbiome (14.05.2021)
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Journal Article
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
Konstantinidis, Konstantinos T, Tiedje, James M
Published in Current opinion in microbiology (01.10.2007)
Published in Current opinion in microbiology (01.10.2007)
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Journal Article
Microbes and Climate Change: a Research Prospectus for the Future
Tiedje, James M, Bruns, Mary Ann, Casadevall, Arturo, Criddle, Craig S, Eloe-Fadrosh, Emiley, Karl, David M, Nguyen, Nguyen K, Zhou, Jizhong
Published in mBio (28.06.2022)
Published in mBio (28.06.2022)
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Journal Article
Genomic Insights That Advance the Species Definition for Prokaryotes
Konstantinidis, Konstantinos T., Tiedje, James M.
Published in Proceedings of the National Academy of Sciences - PNAS (15.02.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (15.02.2005)
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Journal Article
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments
Muziasari, Windi I., Pärnänen, Katariina, Johnson, Timothy A., Lyra, Christina, Karkman, Antti, Stedtfeld, Robert D., Tamminen, Manu, Tiedje, James M., Virta, Marko
Published in FEMS microbiology ecology (01.04.2016)
Published in FEMS microbiology ecology (01.04.2016)
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