CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
Tang, Zhonghui, Luo, Oscar Junhong, Li, Xingwang, Zheng, Meizhen, Zhu, Jacqueline Jufen, Szalaj, Przemyslaw, Trzaskoma, Pawel, Magalska, Adriana, Wlodarczyk, Jakub, Ruszczycki, Blazej, Michalski, Paul, Piecuch, Emaly, Wang, Ping, Wang, Danjuan, Tian, Simon Zhongyuan, Penrad-Mobayed, May, Sachs, Laurent M., Ruan, Xiaoan, Wei, Chia-Lin, Liu, Edison T., Wilczynski, Grzegorz M., Plewczynski, Dariusz, Li, Guoliang, Ruan, Yijun
Published in Cell (17.12.2015)
Published in Cell (17.12.2015)
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Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions
Li, Xingwang, Luo, Oscar Junhong, Wang, Ping, Zheng, Meizhen, Wang, Danjuan, Piecuch, Emaly, Zhu, Jacqueline Jufen, Tian, Simon Zhongyuan, Tang, Zhonghui, Li, Guoliang, Ruan, Yijun
Published in Nature protocols (01.05.2017)
Published in Nature protocols (01.05.2017)
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Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response
Amin, Ruhul, Shukla, Anjali, Zhu, Jacqueline Jufen, Kim, Sohyoung, Wang, Ping, Tian, Simon Zhongyuan, Tran, Andy D, Paul, Debasish, Cappell, Steven D, Burkett, Sandra, Liu, Huaitian, Lee, Maxwell P, Kruhlak, Michael J, Dwyer, Jennifer E, Simpson, R Mark, Hager, Gordon L, Ruan, Yijun, Hunter, Kent W
Published in Nature communications (13.12.2021)
Published in Nature communications (13.12.2021)
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Assessment of safety and efficacy of long-term treatment with combination lumacaftor and ivacaftor therapy in patients with cystic fibrosis homozygous for the F508del-CFTR mutation (PROGRESS): a phase 3, extension study
Konstan, Michael W, McKone, Edward F, Moss, Richard B, Marigowda, Gautham, Tian, Simon, Waltz, David, Huang, Xiaohong, Lubarsky, Barry, Rubin, Jaime, Millar, Stefanie J, Pasta, David J, Mayer-Hamblett, Nicole, Goss, Christopher H, Morgan, Wayne, Sawicki, Gregory S
Published in The lancet respiratory medicine (01.02.2017)
Published in The lancet respiratory medicine (01.02.2017)
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Comparative Effectiveness of Mycophenolate Mofetil for the Treatment of Juvenile‐Onset Proliferative Lupus Nephritis
Tian, Simon Y., Silverman, Earl D., Pullenayegum, Eleanor, Brown, Patrick E., Beyene, Joseph, Feldman, Brian M.
Published in Arthritis care & research (2010) (01.12.2017)
Published in Arthritis care & research (2010) (01.12.2017)
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Rora Regulates Neutrophil Migration and Activation in Zebrafish
Hsu, Alan Y, Wang, Tianqi, Syahirah, Ramizah, Liu, Sheng, Li, Kailing, Zhang, Weiwei, Wang, Jiao, Cao, Ziming, Tian, Simon, Matosevic, Sandro, Staiger, Christopher J, Wan, Jun, Deng, Qing
Published in Frontiers in immunology (04.03.2022)
Published in Frontiers in immunology (04.03.2022)
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Specific multivalent molecules boost CRISPR-mediated transcriptional activation
Chen, Rui, Shi, Xinyao, Yao, Xiangrui, Gao, Tong, Huang, Guangyu, Ning, Duo, Cao, Zemin, Xu, Youxin, Liang, Weizheng, Tian, Simon Zhongyuan, Zhu, Qionghua, Fang, Liang, Zheng, Meizhen, Hu, Yuhui, Cui, Huanhuan, Chen, Wei
Published in Nature communications (22.08.2024)
Published in Nature communications (22.08.2024)
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MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms
Kim, Minji, Zheng, Meizhen, Tian, Simon Zhongyuan, Lee, Byoungkoo, Chuang, Jeffrey H, Ruan, Yijun
Published in Genome Biology (25.11.2019)
Published in Genome Biology (25.11.2019)
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Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia
Wang, Ping, Tang, Zhonghui, Lee, Byoungkoo, Zhu, Jacqueline Jufen, Cai, Liuyang, Szalaj, Przemyslaw, Tian, Simon Zhongyuan, Zheng, Meizhen, Plewczynski, Dariusz, Ruan, Xiaoan, Liu, Edison T, Wei, Chia-Lin, Ruan, Yijun
Published in Genome Biology (11.05.2020)
Published in Genome Biology (11.05.2020)
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MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification
Tian, Simon Zhongyuan, Li, Guoliang, Ning, Duo, Jing, Kai, Xu, Yewen, Yang, Yang, Fullwood, Melissa J, Yin, Pengfei, Huang, Guangyu, Plewczynski, Dariusz, Zhai, Jixian, Dai, Ziwei, Chen, Wei, Zheng, Meizhen
Published in Briefings in bioinformatics (19.11.2022)
Published in Briefings in bioinformatics (19.11.2022)
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Immunosuppressive therapies for the induction treatment of proliferative lupus nephritis: a systematic review and network metaanalysis
Tian, Simon Yu, Feldman, Brian M, Beyene, Joseph, Brown, Patrick E, Uleryk, Elizabeth M, Silverman, Earl D
Published in Journal of rheumatology (01.10.2014)
Published in Journal of rheumatology (01.10.2014)
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Canada-wide mixed methods analysis evaluating the reasons for inappropriate emergency department presentation in patients with a history of atrial fibrillation: the multicentre AF-ED trial
Hong, Kathryn Lauren, Babiolakis, Corinne, Zile, Brigita, Bullen, Milena, Haseeb, Sohaib, Halperin, Frank, Hohl, Corinne M, Magee, Kirk, Sandhu, Roopinder K, Tian, Simon Yu, Kennedy, Ashley, Lobban, Trudie, Mariano, Zana, Dorian, Paul, Angaran, Paul, Evans, Marilyn, Leong-Sit, Peter, Glover, Benedict M
Published in BMJ open (16.04.2020)
Published in BMJ open (16.04.2020)
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MCI-frcnn: A deep learning method for topological micro-domain boundary detection
Tian, Simon Zhongyuan, Yin, Pengfei, Jing, Kai, Yang, Yang, Xu, Yewen, Huang, Guangyu, Ning, Duo, Fullwood, Melissa J, Zheng, Meizhen
Published in Frontiers in cell and developmental biology (30.11.2022)
Published in Frontiers in cell and developmental biology (30.11.2022)
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Multiplex chromatin interactions with single-molecule precision
Zheng, Meizhen, Tian, Simon Zhongyuan, Capurso, Daniel, Kim, Minji, Maurya, Rahul, Lee, Byoungkoo, Piecuch, Emaly, Gong, Liang, Zhu, Jacqueline Jufen, Li, Zhihui, Wong, Chee Hong, Ngan, Chew Yee, Wang, Ping, Ruan, Xiaoan, Wei, Chia-Lin, Ruan, Yijun
Published in Nature (London) (01.02.2019)
Published in Nature (London) (01.02.2019)
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Data from the US and UK cystic fibrosis registries support disease modification by CFTR modulation with ivacaftor
Bessonova, Leona, Volkova, Nataliya, Higgins, Mark, Bengtsson, Leif, Tian, Simon, Simard, Christopher, Konstan, Michael W, Sawicki, Gregory S, Sewall, Ase, Nyangoma, Stephen, Elbert, Alexander, Marshall, Bruce C, Bilton, Diana
Published in Thorax (01.08.2018)
Published in Thorax (01.08.2018)
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