GUNC: detection of chimerism and contamination in prokaryotic genomes
Orakov, Askarbek, Fullam, Anthony, Coelho, Luis Pedro, Khedkar, Supriya, Szklarczyk, Damian, Mende, Daniel R, Schmidt, Thomas S B, Bork, Peer
Published in Genome Biology (13.06.2021)
Published in Genome Biology (13.06.2021)
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Microbial abundance, activity and population genomic profiling with mOTUs2
Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S B, Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D, Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi
Published in Nature communications (04.03.2019)
Published in Nature communications (04.03.2019)
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Journal Article
Drivers and determinants of strain dynamics following fecal microbiota transplantation
Schmidt, Thomas S. B., Li, Simone S., Maistrenko, Oleksandr M., Akanni, Wasiu, Coelho, Luis Pedro, Dolai, Sibasish, Fullam, Anthony, Glazek, Anna M., Hercog, Rajna, Herrema, Hilde, Jung, Ferris, Kandels, Stefanie, Orakov, Askarbek, Thielemann, Roman, von Stetten, Moritz, Van Rossum, Thea, Benes, Vladimir, Borody, Thomas J., de Vos, Willem M., Ponsioen, Cyriel Y., Nieuwdorp, Max, Bork, Peer
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
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Journal Article
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
Maistrenko, Oleksandr M, Mende, Daniel R, Luetge, Mechthild, Hildebrand, Falk, Schmidt, Thomas S B, Li, Simone S, Rodrigues, João F Matias, von Mering, Christian, Pedro Coelho, Luis, Huerta-Cepas, Jaime, Sunagawa, Shinichi, Bork, Peer
Published in The ISME Journal (01.05.2020)
Published in The ISME Journal (01.05.2020)
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Disentangling the mechanisms shaping the surface ocean microbiota
Logares, Ramiro, Deutschmann, Ina M, Junger, Pedro C, Giner, Caterina R, Krabberød, Anders K, Schmidt, Thomas S B, Rubinat-Ripoll, Laura, Mestre, Mireia, Salazar, Guillem, Ruiz-González, Clara, Sebastián, Marta, de Vargas, Colomban, Acinas, Silvia G, Duarte, Carlos M, Gasol, Josep M, Massana, Ramon
Published in Microbiome (20.04.2020)
Published in Microbiome (20.04.2020)
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Development of non-alcoholic steatohepatitis is associated with gut microbiota but not with oxysterol enzymes CH25H, EBI2, or CYP7B1 in mice
Wyss, Jacqueline, Raselli, Tina, Wyss, Annika, Telzerow, Anja, Rogler, Gerhard, Krupka, Niklas, Yilmaz, Bahtiyar, Schmidt, Thomas S B, Misselwitz, Benjamin
Published in BMC microbiology (28.02.2024)
Published in BMC microbiology (28.02.2024)
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Journal Article
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
Fullam, Anthony, Letunic, Ivica, Schmidt, Thomas S B, Ducarmon, Quinten R, Karcher, Nicolai, Khedkar, Supriya, Kuhn, Michael, Larralde, Martin, Maistrenko, Oleksandr M, Malfertheiner, Lukas, Milanese, Alessio, Rodrigues, Joao Frederico Matias, Sanchis-López, Claudia, Schudoma, Christian, Szklarczyk, Damian, Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, von Mering, Christian, Bork, Peer, Mende, Daniel R
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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A new species of termite, Prorhinotermes cotym (Blattodea: Isoptera: Rhinotermitidae: Prorhinotermitinae), from the Kerala part of the western ghats, India
Joseph, Edwin, Amina, Poovoli, Thomas B S, Sarath, Jayan, Namitha, Mathew, Jobin
Published in International journal of tropical insect science (01.10.2023)
Published in International journal of tropical insect science (01.10.2023)
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Journal Article
Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale
Schmidt, Thomas S B, Matias Rodrigues, João F, von Mering, Christian
Published in PLoS computational biology (01.04.2014)
Published in PLoS computational biology (01.04.2014)
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Journal Article
A Global Analysis of Tortoise and Freshwater Turtle Distributions with Identification of Priority Conservation Areas
Buhlmann, Kurt A, Akre, Thomas S. B, Iverson, John B, Karapatakis, Deno, Mittermeier, Russell A, Georges, Arthur, Rhodin, Anders G. J, van Dijk, Peter Paul, Gibbons, J. Whitfield
Published in Chelonian conservation and biology (01.12.2009)
Published in Chelonian conservation and biology (01.12.2009)
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CDKN2B methylation status and isolated chromosome 7 abnormalities predict responses to treatment with 5-azacytidine
RAJ, K, JOHN, A, HO, A, CHRONIS, C, KHANL, S, SAMUEL, J, POMPLUN, S, THOMAS, N. S. B, MUFTI, G. J
Published in Leukemia (01.09.2007)
Published in Leukemia (01.09.2007)
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Rapid emergence of daptomycin resistance in clinical isolates of Corynebacterium striatum… a cautionary tale
McElvania TeKippe, E., Thomas, B. S., Ewald, G. A., Lawrence, S. J., Burnham, C.-A. D.
Published in European journal of clinical microbiology & infectious diseases (01.12.2014)
Published in European journal of clinical microbiology & infectious diseases (01.12.2014)
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Reactive oxygen species, DNA damage, and error-prone repair : A model for genomic instability with progression in myeloid leukemia?
RASSOOL, Feyruz V, GAYMES, Terry J, MULTI, Ghulam J, PADUA, Rose Ann, OMIDVAR, Nader, BRADY, Nicola, BEURLET, Stephanie, PLA, Marika, REBOUL, Murielle, LEA, Nicholas, CHOMIENNE, Christine, THOMAS, Nicholas S. B
Published in Cancer research (Chicago, Ill.) (15.09.2007)
Published in Cancer research (Chicago, Ill.) (15.09.2007)
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Meta- and Pooled Analyses of the Methylenetetrahydrofolate Reductase (MTHFR) C677T Polymorphism and Colorectal Cancer: A HuGE-GSEC Review
Taioli, E., Garza, M. A., Ahn, Y. O., Bishop, D. T., Bost, J., Budai, B., Chen, K., Gemignani, F., Keku, T., Lima, C. S. P., Le Marchand, L., Matsuo, K., Moreno, V., Plaschke, J., Pufulete, M., Thomas, S. B., Toffoli, G., Wolf, C. R., Moore, C. G., Little, J.
Published in American journal of epidemiology (15.11.2009)
Published in American journal of epidemiology (15.11.2009)
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Iontophoresis and topical application of 8% arginine-calcium carbonate to treat dentinal hypersensitivity
Kumar, S, Thomas, B, Gupta, K, Guddattu, V, Alexander, Mohan
Published in Nigerian journal of clinical practice (01.08.2018)
Published in Nigerian journal of clinical practice (01.08.2018)
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