VIRULIGN: fast codon-correct alignment and annotation of viral genomes
Libin, Pieter J K, Deforche, Koen, Abecasis, Ana B, Theys, Kristof
Published in Bioinformatics (15.05.2019)
Published in Bioinformatics (15.05.2019)
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Journal Article
Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1-6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance
Cuypers, Lize, Li, Guangdi, Libin, Pieter, Piampongsant, Supinya, Vandamme, Anne-Mieke, Theys, Kristof
Published in Viruses (16.09.2015)
Published in Viruses (16.09.2015)
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Journal Article
Drivers of HIV-1 transmission: The Portuguese case
Pineda-Peña, Andrea-Clemencia, Pingarilho, Marta, Li, Guangdi, Vrancken, Bram, Libin, Pieter, Gomes, Perpétua, Camacho, Ricardo Jorge, Theys, Kristof, Barroso Abecasis, Ana
Published in PloS one (30.09.2019)
Published in PloS one (30.09.2019)
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Journal Article
Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users
Paraschiv, Simona, Banica, Leontina, Nicolae, Ionelia, Niculescu, Iulia, Abagiu, Adrian, Jipa, Raluca, Pineda-Peña, Andrea-Clemencia, Pingarilho, Marta, Neaga, Emil, Theys, Kristof, Libin, Pieter, Otelea, Dan, Abecasis, Ana
Published in PloS one (09.10.2017)
Published in PloS one (09.10.2017)
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Journal Article
Functional conservation of HIV-1 Gag: implications for rational drug design
Li, Guangdi, Verheyen, Jens, Rhee, Soo-Yon, Voet, Arnout, Vandamme, Anne-Mieke, Theys, Kristof
Published in Retrovirology (31.10.2013)
Published in Retrovirology (31.10.2013)
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Journal Article
Zika genomics urgently need standardized and curated reference sequences
Theys, Kristof, Libin, Pieter, Dallmeier, Kai, Pineda-Peña, Andrea-Clemencia, Vandamme, Anne-Mieke, Cuypers, Lize, Abecasis, Ana B
Published in PLoS pathogens (01.09.2017)
Published in PLoS pathogens (01.09.2017)
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Journal Article
Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations
Pingarilho, Marta, Pimentel, Victor, Diogo, Isabel, Fernandes, Sandra, Miranda, Mafalda, Pineda-Pena, Andrea, Libin, Pieter, Theys, Kristof, Martins, M Rosário O, Vandamme, Anne-Mieke, Camacho, Ricardo, Gomes, Perpétua, Abecasis, Ana
Published in Viruses (30.10.2020)
Published in Viruses (30.10.2020)
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Journal Article
Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases
Theys, Kristof, Lemey, Philippe, Vandamme, Anne-Mieke, Baele, Guy
Published in Frontiers in public health (02.08.2019)
Published in Frontiers in public health (02.08.2019)
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Journal Article
Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas
de Moraes, Laise, Portilho, Moyra M, Vrancken, Bram, Van den Broeck, Frederik, Santos, Luciane Amorim, Cucco, Marina, Tauro, Laura B, Kikuti, Mariana, Silva, Monaise M O, Campos, Gúbio S, Reis, Mitermayer G, Barral, Aldina, Barral-Netto, Manoel, Boaventura, Viviane Sampaio, Vandamme, Anne-Mieke, Theys, Kristof, Lemey, Philippe, Ribeiro, Guilherme S, Khouri, Ricardo
Published in Viruses (25.05.2023)
Published in Viruses (25.05.2023)
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Journal Article
HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012
Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Stylianou, Dora C., Demetriades, Ioannis, Abecasis, Ana B., Kostrikis, Leondios G.
Published in Scientific reports (26.01.2018)
Published in Scientific reports (26.01.2018)
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Journal Article
Time to Harmonize Dengue Nomenclature and Classification
Cuypers, Lize, Libin, Pieter J K, Simmonds, Peter, Nowé, Ann, Muñoz-Jordán, Jorge, Alcantara, Luiz Carlos Junior, Vandamme, Anne-Mieke, Santiago, Gilberto A, Theys, Kristof
Published in Viruses (18.10.2018)
Published in Viruses (18.10.2018)
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Journal Article
A genetic IFN/STAT1/FAS axis determines CD4 T stem cell memory levels and apoptosis in healthy controls and Adult T-cell Leukemia patients
Khouri, Ricardo, Silva-Santos, Gilvanéia, Dierckx, Tim, Menezes, Soraya Maria, Decanine, Daniele, Theys, Kristof, Silva, Aline Clara, Farré, Lourdes, Bittencourt, Achiléa, Mangino, Massimo, Roederer, Mario, Vandamme, Anne-Mieke, Van Weyenbergh, Johan
Published in Oncoimmunology (04.05.2018)
Published in Oncoimmunology (04.05.2018)
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Journal Article
CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba
Kouri, Vivian, Khouri, Ricardo, Alemán, Yoan, Abrahantes, Yeissel, Vercauteren, Jurgen, Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Megens, Sarah, Moutschen, Michel, Pfeifer, Nico, Van Weyenbergh, Johan, Pérez, Ana B., Pérez, Jorge, Pérez, Lissette, Van Laethem, Kristel, Vandamme, Anne-Mieke
Published in EBioMedicine (01.03.2015)
Published in EBioMedicine (01.03.2015)
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Journal Article
Web Resource
Characterization of Nucleoside Reverse Transcriptase Inhibitor-Associated Mutations in the RNase H Region of HIV-1 Subtype C Infected Individuals
Ngcapu, Sinaye, Theys, Kristof, Libin, Pieter, Marconi, Vincent C, Sunpath, Henry, Ndung'u, Thumbi, Gordon, Michelle L
Published in Viruses (08.11.2017)
Published in Viruses (08.11.2017)
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Journal Article
The incidence of multidrug and full class resistance in HIV-1 infected patients is decreasing over time (2001-2006) in Portugal
Vercauteren, Jurgen, Deforche, Koen, Theys, Kristof, Debruyne, Michiel, Duque, Luis Miguel, Peres, Susana, Carvalho, Ana Patricia, Mansinho, Kamal, Vandamme, Anne-Mieke, Camacho, Ricardo
Published in Retrovirology (01.02.2008)
Published in Retrovirology (01.02.2008)
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Journal Article
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape
Theys, Kristof, Deforche, Koen, Beheydt, Gertjan, Moreau, Yves, van Laethem, Kristel, Lemey, Philippe, Camacho, Ricardo J, Rhee, Soo-Yon, Shafer, Robert W, Van Wijngaerden, Eric, Vandamme, Anne-Mieke
Published in BMC bioinformatics (03.08.2010)
Published in BMC bioinformatics (03.08.2010)
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Journal Article
Molecular epidemiology of HIV-1 infection in Cyprus: onward transmission is predominantly driven by young adults
Pineda-Peña, Andrea-Clemencia, Theys, Kristof, Hezka, Johana, Kousiappa, Ioanna, Andreou, Maria, Demetriades, Ioannis, Abecasis, Ana Barroso, Kostrikis, Leondios G.
Published in Journal of Virus Eradication (01.05.2016)
Published in Journal of Virus Eradication (01.05.2016)
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Journal Article
A Bayesian network approach to study host and viral genetic correlates of HIV-1 disease progression
Snoek, Joke, Casado, Concepción, Colombo, Sara, Rauch, Andri, García, Soledad, Martinez, Raquel, Theys, Kristof, Khouri, Ricardo, Günthard, Huldrych F, Telenti, Amalio, López-Galíndez, Cecilio, Vandamme, Anne-Mieke
Published in Retrovirology (03.10.2011)
Published in Retrovirology (03.10.2011)
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Journal Article