From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences
Thessen, Anne E, Bogdan, Paul, Patterson, David J, Casey, Theresa M, Hinojo-Hinojo, César, de Lange, Orlando, Haendel, Melissa A
Published in PLoS biology (26.03.2021)
Published in PLoS biology (26.03.2021)
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Journal Article
The influence of droplet size and biodegradation on the transport of subsurface oil droplets during the Deepwater Horizon spill: a model sensitivity study
North, Elizabeth W, Adams, E Eric, Thessen, Anne E, Schlag, Zachary, He, Ruoying, Socolofsky, Scott A, Masutani, Stephen M, Peckham, Scott D
Published in Environmental research letters (01.02.2015)
Published in Environmental research letters (01.02.2015)
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Journal Article
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences
Stefancsik, Ray, Balhoff, James P., Balk, Meghan A., Ball, Robyn L., Bello, Susan M., Caron, Anita R., Chesler, Elissa J., de Souza, Vinicius, Gehrke, Sarah, Haendel, Melissa, Harris, Laura W., Harris, Nomi L., Ibrahim, Arwa, Koehler, Sebastian, Matentzoglu, Nicolas, McMurry, Julie A., Mungall, Christopher J., Munoz-Torres, Monica C., Putman, Tim, Robinson, Peter, Smedley, Damian, Sollis, Elliot, Thessen, Anne E., Vasilevsky, Nicole, Walton, David O., Osumi-Sutherland, David
Published in Mammalian genome (01.09.2023)
Published in Mammalian genome (01.09.2023)
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Journal Article
Transforming the study of organisms: Phenomic data models and knowledge bases
Thessen, Anne E, Walls, Ramona L, Vogt, Lars, Singer, Jessica, Warren, Robert, Buttigieg, Pier Luigi, Balhoff, James P, Mungall, Christopher J, McGuinness, Deborah L, Stucky, Brian J, Yoder, Matthew J, Haendel, Melissa A
Published in PLoS computational biology (24.11.2020)
Published in PLoS computational biology (24.11.2020)
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Journal Article
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium
Clarke, Jennifer L, Cooper, Laurel D, Poelchau, Monica F, Berardini, Tanya Z, Elser, Justin, Farmer, Andrew D, Ficklin, Stephen, Kumari, Sunita, Laporte, Marie-Angélique, Nelson, Rex T, Sadohara, Rie, Selby, Peter, Thessen, Anne E, Whitehead, Brandon, Sen, Taner Z
Published in Database : the journal of biological databases and curation (15.11.2023)
Published in Database : the journal of biological databases and curation (15.11.2023)
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Journal Article
Using knowledge graphs to infer gene expression in plants
Thessen, Anne E, Cooper, Laurel, Swetnam, Tyson L, Hegde, Harshad, Reese, Justin, Elser, Justin, Jaiswal, Pankaj
Published in Frontiers in artificial intelligence (13.06.2023)
Published in Frontiers in artificial intelligence (13.06.2023)
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Journal Article
Proper Attribution for Curation and Maintenance of Research Collections: Metadata Recommendations of the RDA/TDWG Working Group
Thessen, Anne E, Woodburn, Matt, Koureas, Dimitris, Paul, Deborah, Conlon, Michael, Shorthouse, David P, Ramdeen, Sarah
Published in Data science journal (08.11.2019)
Published in Data science journal (08.11.2019)
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Journal Article
An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges
Fecho, Karamarie, Bizon, Chris, Issabekova, Tursynay, Moxon, Sierra, Thessen, Anne E., Abdollahi, Shervin, Baranzini, Sergio E., Belhu, Basazin, Byrd, William E., Chung, Lawrence, Crouse, Andrew, Duby, Marc P., Ferguson, Stephen, Foksinska, Aleksandra, Forero, Laura, Friedman, Jennifer, Gardner, Vicki, Glusman, Gwênlyn, Hadlock, Jennifer, Hanspers, Kristina, Hinderer, Eugene, Hobbs, Charlotte, Hyde, Gregory, Huang, Sui, Koslicki, David, Mease, Philip, Muller, Sandrine, Mungall, Christopher J., Ramsey, Stephen A., Roach, Jared, Rubin, Irit, Schurman, Shepherd H., Shalev, Anath, Smith, Brett, Soman, Karthik, Stemann, Sarah, Su, Andrew I., Ta, Casey, Watkins, Paul B., Williams, Mark D., Wu, Chunlei, Xu, Colleen H.
Published in Journal of clinical and translational science (14.09.2023)
Published in Journal of clinical and translational science (14.09.2023)
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Journal Article
20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration
Thessen, Anne E, Poelen, Jorrit H, Collins, Matthew, Hammock, Jen
Published in PeerJ. Computer science (17.09.2018)
Published in PeerJ. Computer science (17.09.2018)
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Journal Article
Implementation of Zebrafish Ontologies for Toxicology Screening
Thessen, Anne E, Marvel, Skylar, Achenbach, J C, Fischer, Stephan, Haendel, Melissa A, Hayward, Kimberly, Klüver, Nils, Könemann, Sarah, Legradi, Jessica, Lein, Pamela, Leong, Connor, Mylroie, J Erik, Padilla, Stephanie, Perone, Dante, Planchart, Antonio, Prieto, Rafael Miñana, Muriana, Arantza, Quevedo, Celia, Reif, David, Ryan, Kristen, Stinckens, Evelyn, Truong, Lisa, Vergauwen, Lucia, Vom Berg, Colette, Wilbanks, Mitch, Yaghoobi, Bianca, Hamm, Jon
Published in Frontiers in toxicology (11.03.2022)
Published in Frontiers in toxicology (11.03.2022)
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Journal Article
A statistical assessment of population trends for data deficient Mexican amphibians
Quintero, Esther, Thessen, Anne E, Arias-Caballero, Paulina, Ayala-Orozco, Bárbara
Published in PeerJ (San Francisco, CA) (16.12.2014)
Published in PeerJ (San Francisco, CA) (16.12.2014)
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Journal Article
Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health
Trainer, Vera L., Bates, Stephen S., Lundholm, Nina, Thessen, Anne E., Cochlan, William P., Adams, Nicolaus G., Trick, Charles G.
Published in Harmful algae (01.02.2012)
Published in Harmful algae (01.02.2012)
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Journal Article
Emerging semantics to link phenotype and environment
Thessen, Anne E, Bunker, Daniel E, Buttigieg, Pier Luigi, Cooper, Laurel D, Dahdul, Wasila M, Domisch, Sami, Franz, Nico M, Jaiswal, Pankaj, Lawrence-Dill, Carolyn J, Midford, Peter E, Mungall, Christopher J, Ramírez, Martín J, Specht, Chelsea D, Vogt, Lars, Vos, Rutger Aldo, Walls, Ramona L, White, Jeffrey W, Zhang, Guanyang, Deans, Andrew R, Huala, Eva, Lewis, Suzanna E, Mabee, Paula M
Published in PeerJ (San Francisco, CA) (14.12.2015)
Published in PeerJ (San Francisco, CA) (14.12.2015)
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Journal Article
Effect of salinity on the distribution, growth, and toxicity of Karenia spp
Maier Brown, Alisa F., Dortch, Quay, Dolah, Frances M. Van, Leighfield, Tod A., Morrison, Wendy, Thessen, Anne E., Steidinger, Karen, Richardson, Bill, Moncreiff, Cynthia A., Pennock, Jonathan R.
Published in Harmful algae (01.03.2006)
Published in Harmful algae (01.03.2006)
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Journal Article