The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity
Sebé-Pedrós, Arnau, Ballaré, Cecilia, Parra-Acero, Helena, Chiva, Cristina, Tena, Juan J., Sabidó, Eduard, Gómez-Skarmeta, José Luis, Di Croce, Luciano, Ruiz-Trillo, Iñaki
Published in Cell (19.05.2016)
Published in Cell (19.05.2016)
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
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Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
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Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
Pasquali, Lorenzo, Gaulton, Kyle J, Rodríguez-Seguí, Santiago A, Mularoni, Loris, Miguel-Escalada, Irene, Akerman, İldem, Tena, Juan J, Morán, Ignasi, Gómez-Marín, Carlos, van de Bunt, Martijn, Ponsa-Cobas, Joan, Castro, Natalia, Nammo, Takao, Cebola, Inês, García-Hurtado, Javier, Maestro, Miguel Angel, Pattou, François, Piemonti, Lorenzo, Berney, Thierry, Gloyn, Anna L, Ravassard, Philippe, Skarmeta, José Luis Gómez, Müller, Ferenc, McCarthy, Mark I, Ferrer, Jorge
Published in Nature genetics (01.02.2014)
Published in Nature genetics (01.02.2014)
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Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate
Leon, Anthony, Subirana, Lucie, Magre, Kevin, Cases, Ildefonso, Tena, Juan J., Irimia, Manuel, Gomez-Skarmeta, Jose Luis, Escriva, Hector, Bertrand, Stéphanie
Published in Molecular biology and evolution (11.04.2022)
Published in Molecular biology and evolution (11.04.2022)
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Obesity-associated variants within FTO form long-range functional connections with IRX3
Smemo, Scott, Tena, Juan J, Kim, Kyoung-Han, Gamazon, Eric R, Sakabe, Noboru J, Gómez-Marín, Carlos, Aneas, Ivy, Credidio, Flavia L, Sobreira, Débora R, Wasserman, Nora F, Lee, Ju Hee, Puviindran, Vijitha, Tam, Davis, Shen, Michael, Son, Joe Eun, Vakili, Niki Alizadeh, Sung, Hoon-Ki, Naranjo, Silvia, Acemel, Rafael D, Manzanares, Miguel, Nagy, Andras, Cox, Nancy J, Hui, Chi-Chung, Gomez-Skarmeta, Jose Luis, Nóbrega, Marcelo A
Published in Nature (London) (20.03.2014)
Published in Nature (London) (20.03.2014)
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Amphioxus functional genomics and the origins of vertebrate gene regulation
Marlétaz, Ferdinand, Firbas, Panos N, Maeso, Ignacio, Tena, Juan J, Bogdanovic, Ozren, Perry, Malcolm, Wyatt, Christopher D R, de la Calle-Mustienes, Elisa, Bertrand, Stephanie, Burguera, Demian, Acemel, Rafael D, van Heeringen, Simon J, Naranjo, Silvia, Herrera-Ubeda, Carlos, Skvortsova, Ksenia, Jimenez-Gancedo, Sandra, Aldea, Daniel, Marquez, Yamile, Buono, Lorena, Kozmikova, Iryna, Permanyer, Jon, Louis, Alexandra, Albuixech-Crespo, Beatriz, Le Petillon, Yann, Leon, Anthony, Subirana, Lucie, Balwierz, Piotr J, Duckett, Paul Edward, Farahani, Ensieh, Aury, Jean-Marc, Mangenot, Sophie, Wincker, Patrick, Albalat, Ricard, Benito-Gutiérrez, Èlia, Cañestro, Cristian, Castro, Filipe, D'Aniello, Salvatore, Ferrier, David E K, Huang, Shengfeng, Laudet, Vincent, Marais, Gabriel A B, Pontarotti, Pierre, Schubert, Michael, Seitz, Hervé, Somorjai, Ildiko, Takahashi, Tokiharu, Mirabeau, Olivier, Xu, Anlong, Yu, Jr-Kai, Carninci, Piero, Martinez-Morales, Juan Ramon, Crollius, Hugues Roest, Kozmik, Zbynek, Weirauch, Matthew T, Garcia-Fernàndez, Jordi, Lister, Ryan, Lenhard, Boris, Holland, Peter W H, Escriva, Hector, Gómez-Skarmeta, Jose Luis, Irimia, Manuel
Published in Nature (London) (01.12.2018)
Published in Nature (London) (01.12.2018)
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Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Gómez-Marín, Carlos, Tena, Juan J, Acemel, Rafael D, López-Mayorga, Macarena, Naranjo, Silvia, de la Calle-Mustienes, Elisa, Maeso, Ignacio, Beccari, Leonardo, Aneas, Ivy, Vielmas, Erika, Bovolenta, Paola, Nobrega, Marcelo A, Carvajal, Jaime, Gómez-Skarmeta, José Luis
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
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The little skate genome and the evolutionary emergence of wing-like fins
Marlétaz, Ferdinand, de la Calle-Mustienes, Elisa, Acemel, Rafael D, Paliou, Christina, Naranjo, Silvia, Martínez-García, Pedro Manuel, Cases, Ildefonso, Sleight, Victoria A, Hirschberger, Christine, Marcet-Houben, Marina, Navon, Dina, Andrescavage, Ali, Skvortsova, Ksenia, Duckett, Paul Edward, González-Rajal, Álvaro, Bogdanovic, Ozren, Gibcus, Johan H, Yang, Liyan, Gallardo-Fuentes, Lourdes, Sospedra, Ismael, Lopez-Rios, Javier, Darbellay, Fabrice, Visel, Axel, Dekker, Job, Shubin, Neil, Gabaldón, Toni, Nakamura, Tetsuya, Tena, Juan J, Lupiáñez, Darío G, Rokhsar, Daniel S, Gómez-Skarmeta, José Luis
Published in Nature (London) (20.04.2023)
Published in Nature (London) (20.04.2023)
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CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart
Gomez-Velazquez, Melisa, Badia-Careaga, Claudio, Lechuga-Vieco, Ana Victoria, Nieto-Arellano, Rocio, Tena, Juan J, Rollan, Isabel, Alvarez, Alba, Torroja, Carlos, Caceres, Eva F, Roy, Anna R, Galjart, Niels, Delgado-Olguin, Paul, Sanchez-Cabo, Fatima, Enriquez, Jose Antonio, Gomez-Skarmeta, Jose Luis, Manzanares, Miguel
Published in PLoS genetics (01.08.2017)
Published in PLoS genetics (01.08.2017)
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CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
Franke, Martin, De la Calle-Mustienes, Elisa, Neto, Ana, Almuedo-Castillo, María, Irastorza-Azcarate, Ibai, Acemel, Rafael D, Tena, Juan J, Santos-Pereira, José M, Gómez-Skarmeta, José L
Published in Nature communications (13.09.2021)
Published in Nature communications (13.09.2021)
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Active DNA demethylation at enhancers during the vertebrate phylotypic period
Bogdanović, Ozren, Smits, Arne H, de la Calle Mustienes, Elisa, Tena, Juan J, Ford, Ethan, Williams, Ruth, Senanayake, Upeka, Schultz, Matthew D, Hontelez, Saartje, van Kruijsbergen, Ila, Rayon, Teresa, Gnerlich, Felix, Carell, Thomas, Veenstra, Gert Jan C, Manzanares, Miguel, Sauka-Spengler, Tatjana, Ecker, Joseph R, Vermeulen, Michiel, Gómez-Skarmeta, José Luis, Lister, Ryan
Published in Nature genetics (01.04.2016)
Published in Nature genetics (01.04.2016)
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Gain of gene regulatory network interconnectivity at the origin of vertebrates
Gil-Gálvez, Alejandro, Jiménez-Gancedo, Sandra, Pérez-Posada, Alberto, Franke, Martin, Acemel, Rafael D, Lin, Che-Yi, Chou, Cindy, Su, Yi-Hsien, Yu, Jr-Kai, Bertrand, Stephanie, Schubert, Michael, Escrivá, Héctor, Tena, Juan J, Gómez-Skarmeta, José Luis
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2022)
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Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
Bogdanovic, Ozren, Fernandez-Miñán, Ana, Tena, Juan J, de la Calle-Mustienes, Elisa, Hidalgo, Carmen, van Kruysbergen, Ila, van Heeringen, Simon J, Veenstra, Gert Jan C, Gómez-Skarmeta, José Luis
Published in Genome research (01.10.2012)
Published in Genome research (01.10.2012)
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Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification
Santos-Pereira, José M, Gallardo-Fuentes, Lourdes, Neto, Ana, Acemel, Rafael D, Tena, Juan J
Published in Nature communications (11.07.2019)
Published in Nature communications (11.07.2019)
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An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm
Grau-Bové, Xavier, Subirana, Lucie, Meister, Lydvina, Soubigou, Anaël, Neto, Ana, Elek, Anamaria, Naranjo, Silvia, Fornas, Oscar, Gomez-Skarmeta, Jose Luis, Tena, Juan J, Irimia, Manuel, Bertrand, Stéphanie, Sebé-Pedrós, Arnau, Escriva, Hector
Published in Nature communications (29.05.2024)
Published in Nature communications (29.05.2024)
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Deep conservation of wrist and digit enhancers in fish
Gehrke, Andrew R., Schneider, Igor, de la Calle-Mustienes, Elisa, Tena, Juan J., Gomez-Marin, Carlos, Chandran, Mayuri, Nakamura, Tetsuya, Braasch, Ingo, Postlethwait, John H., Gómez-Skarmeta, José Luis, Shubin, Neil H.
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.2015)
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