Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs
Maeda, Norihiro, Kasukawa, Takeya, Oyama, Rieko, Gough, Julian, Frith, Martin, Engström, Pär G, Lenhard, Boris, Aturaliya, Rajith N, Batalov, Serge, Beisel, Kirk W, Bult, Carol J, Fletcher, Colin F, Forrest, Alistair R R, Furuno, Masaaki, Hill, David, Itoh, Masayoshi, Kanamori-Katayama, Mutsumi, Katayama, Shintaro, Katoh, Masaru, Kawashima, Tsugumi, Quackenbush, John, Ravasi, Timothy, Ring, Brian Z, Shibata, Kazuhiro, Sugiura, Koji, Takenaka, Yoichi, Teasdale, Rohan D, Wells, Christine A, Zhu, Yunxia, Kai, Chikatoshi, Kawai, Jun, Hume, David A, Carninci, Piero, Hayashizaki, Yoshihide
Published in PLoS genetics (01.04.2006)
Published in PLoS genetics (01.04.2006)
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Metagenome fragment classification based on multiple motif-occurrence profiles
Matsushita, Naoki, Seno, Shigeto, Takenaka, Yoichi, Matsuda, Hideo
Published in PeerJ (San Francisco, CA) (04.09.2014)
Published in PeerJ (San Francisco, CA) (04.09.2014)
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Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ‘Somei-yoshino’ across the Japanese archipelago
Ohta, Tazro, Kawashima, Takeshi, Shinozaki, Natsuko O., Dobashi, Akito, Hiraoka, Satoshi, Hoshino, Tatsuhiko, Kanno, Keiichi, Kataoka, Takafumi, Kawashima, Shuichi, Matsui, Motomu, Nemoto, Wataru, Nishijima, Suguru, Suganuma, Natsuki, Suzuki, Haruo, Taguchi, Y-h., Takenaka, Yoichi, Tanigawa, Yosuke, Tsuneyoshi, Momoka, Yoshitake, Kazutoshi, Sato, Yukuto, Yamashita, Riu, Arakawa, Kazuharu, Iwasaki, Wataru
Published in Journal of plant research (01.07.2018)
Published in Journal of plant research (01.07.2018)
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A Method for Isoform Prediction from RNA-Seq Data by Iterative Mapping
Ohno, Tomoshige, Seno, Shigeto, Takenaka, Yoichi, Matsuda, Hideo
Published in IPSJ Transactions on Bioinformatics (2012)
Published in IPSJ Transactions on Bioinformatics (2012)
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A method for similarity search of genomic positional expression using CAGE
Seno, Shigeto, Takenaka, Yoichi, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Matsuda, Hideo
Published in PLoS genetics (01.04.2006)
Published in PLoS genetics (01.04.2006)
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Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer
Ehteshami Bejnordi, Babak, Veta, Mitko, Johannes van Diest, Paul, van Ginneken, Bram, Karssemeijer, Nico, Litjens, Geert, van der Laak, Jeroen A. W. M, Hermsen, Meyke, Manson, Quirine F, Balkenhol, Maschenka, Geessink, Oscar, Stathonikos, Nikolaos, van Dijk, Marcory CRF, Bult, Peter, Beca, Francisco, Beck, Andrew H, Wang, Dayong, Khosla, Aditya, Gargeya, Rishab, Irshad, Humayun, Zhong, Aoxiao, Dou, Qi, Li, Quanzheng, Chen, Hao, Lin, Huang-Jing, Heng, Pheng-Ann, Haß, Christian, Bruni, Elia, Wong, Quincy, Halici, Ugur, Öner, Mustafa Ümit, Cetin-Atalay, Rengul, Berseth, Matt, Khvatkov, Vitali, Vylegzhanin, Alexei, Kraus, Oren, Shaban, Muhammad, Rajpoot, Nasir, Awan, Ruqayya, Sirinukunwattana, Korsuk, Qaiser, Talha, Tsang, Yee-Wah, Tellez, David, Annuscheit, Jonas, Hufnagl, Peter, Valkonen, Mira, Kartasalo, Kimmo, Latonen, Leena, Ruusuvuori, Pekka, Liimatainen, Kaisa, Albarqouni, Shadi, Mungal, Bharti, George, Ami, Demirci, Stefanie, Navab, Nassir, Watanabe, Seiryo, Seno, Shigeto, Takenaka, Yoichi, Matsuda, Hideo, Ahmady Phoulady, Hady, Kovalev, Vassili, Kalinovsky, Alexander, Liauchuk, Vitali, Bueno, Gloria, Fernandez-Carrobles, M. Milagro, Serrano, Ismael, Deniz, Oscar, Racoceanu, Daniel, Venâncio, Rui
Published in JAMA : the journal of the American Medical Association (12.12.2017)
Published in JAMA : the journal of the American Medical Association (12.12.2017)
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A Method for Clustering Gene Expression Data Based on Graph Structure
Seno, Shigeto, Teramoto, Reiji, Takenaka, Yoichi, Matsuda, Hideo
Published in Genome Informatics (2004)
Published in Genome Informatics (2004)
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Journal Article
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Grapotte, Mathys, Saraswat, Manu, Bessière, Chloé, Menichelli, Christophe, Ramilowski, Jordan A., Severin, Jessica, Hayashizaki, Yoshihide, Itoh, Masayoshi, Tagami, Michihira, Murata, Mitsuyoshi, Kojima-Ishiyama, Miki, Noma, Shohei, Noguchi, Shuhei, Kasukawa, Takeya, Hasegawa, Akira, Suzuki, Harukazu, Nishiyori-Sueki, Hiromi, Frith, Martin C., Chatelain, Clément, Carninci, Piero, de Hoon, Michiel J. L., Wasserman, Wyeth W., Bréhélin, Laurent, Lecellier, Charles-Henri
Published in Nature communications (02.06.2021)
Published in Nature communications (02.06.2021)
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Journal Article
A maximum neural network approach for N -queens problems
Funabiki, Nobuo, Takenaka, Yoichi, Nishikawa, Seishi
Published in Biological cybernetics (01.05.1997)
Published in Biological cybernetics (01.05.1997)
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