Nucleosome allostery in pioneer transcription factor binding
Tan, Cheng, Takada, Shoji
Published in Proceedings of the National Academy of Sciences - PNAS (25.08.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (25.08.2020)
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Journal Article
Reconstruction of Atomistic Structures from Coarse-Grained Models for Protein–DNA Complexes
Shimizu, Masahiro, Takada, Shoji
Published in Journal of chemical theory and computation (13.03.2018)
Published in Journal of chemical theory and computation (13.03.2018)
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Journal Article
Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study
Mizutani, Azuki, Tan, Cheng, Sugita, Yuji, Takada, Shoji
Published in PLoS computational biology (24.07.2023)
Published in PLoS computational biology (24.07.2023)
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Journal Article
End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images
Matsunaga, Yasuhiro, Fuchigami, Sotaro, Ogane, Tomonori, Takada, Shoji
Published in Scientific reports (04.01.2023)
Published in Scientific reports (04.01.2023)
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Journal Article
Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations
Takada, Shoji, Kanada, Ryo, Tan, Cheng, Terakawa, Tsuyoshi, Li, Wenfei, Kenzaki, Hiroo
Published in Accounts of chemical research (15.12.2015)
Published in Accounts of chemical research (15.12.2015)
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Journal Article
Extension of the iSoLF implicit-solvent coarse-grained model for multicomponent lipid bilayers
Ugarte La Torre, Diego, Takada, Shoji, Sugita, Yuji
Published in The Journal of chemical physics (21.08.2023)
Published in The Journal of chemical physics (21.08.2023)
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Journal Article
Nucleosome Crowding in Chromatin Slows the Diffusion but Can Promote Target Search of Proteins
Kanada, Ryo, Terakawa, Tsuyoshi, Kenzaki, Hiroo, Takada, Shoji
Published in Biophysical journal (18.06.2019)
Published in Biophysical journal (18.06.2019)
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Journal Article