A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis
Brooks-Warburton, Johanne, Modos, Dezso, Sudhakar, Padhmanand, Madgwick, Matthew, Thomas, John P., Bohar, Balazs, Fazekas, David, Zoufir, Azedine, Kapuy, Orsolya, Szalay-Beko, Mate, Verstockt, Bram, Hall, Lindsay J., Watson, Alastair, Tremelling, Mark, Parkes, Miles, Vermeire, Severine, Bender, Andreas, Carding, Simon R., Korcsmaros, Tamas
Published in Nature communications (28.04.2022)
Published in Nature communications (28.04.2022)
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SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks
Fazekas, Dávid, Koltai, Mihály, Türei, Dénes, Módos, Dezső, Pálfy, Máté, Dúl, Zoltán, Zsákai, Lilian, Szalay-Bekő, Máté, Lenti, Katalin, Farkas, Illés J, Vellai, Tibor, Csermely, Péter, Korcsmáros, Tamás
Published in BMC systems biology (18.01.2013)
Published in BMC systems biology (18.01.2013)
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AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation
Csabai, Luca, Bohár, Balázs, Türei, Dénes, Prabhu, Sowmya, Földvári-Nagy, László, Madgwick, Matthew, Fazekas, Dávid, Módos, Dezső, Ölbei, Márton, Halka, Themis, Poletti, Martina, Kornilova, Polina, Kadlecsik, Tamás, Demeter, Amanda, Szalay-Bekő, Máté, Kapuy, Orsolya, Lenti, Katalin, Vellai, Tibor, Gul, Lejla, Korcsmáros, Tamás
Published in Autophagy (02.01.2024)
Published in Autophagy (02.01.2024)
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Journal Article
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks
Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Network-based tools for the identification of novel drug targets
Farkas, Illés J, Korcsmáros, Tamás, Kovács, István A, Mihalik, Ágoston, Palotai, Robin, Simkó, Gábor I, Szalay, Kristóf Z, Szalay-Beko, Máté, Vellai, Tibor, Wang, Shijun, Csermely, Peter
Published in Science signaling (17.05.2011)
Published in Science signaling (17.05.2011)
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Journal Article
Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 3; peer review: 2 approved]
Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Published in F1000 research (2023)
Published in F1000 research (2023)
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Journal Article
Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology [version 1; peer review: 2 approved with reservations]
Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Published in F1000 research (2021)
Published in F1000 research (2021)
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Journal Article
Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 2; peer review: 2 approved]
Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Published in F1000 research (2021)
Published in F1000 research (2021)
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Journal Article
The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein–protein interaction and signalling networks
Ágg, Bence, Császár, Andrea, Szalay-Bekő, Máté, Veres, Dániel V, Mizsei, Réka, Ferdinandy, Péter, Csermely, Péter, Kovács, István A
Published in Bioinformatics (01.11.2019)
Published in Bioinformatics (01.11.2019)
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Journal Article
How creative elements help the recovery of networks after crisis: lessons from biology
Á., Mihalik, A. S., Kaposi, I. A., Kovács
Published in Networks in Social Policy Problems (23.08.2012)
Published in Networks in Social Policy Problems (23.08.2012)
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Book Chapter
The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks
Agg, Bence, Csaszar, Andrea, Szalay-Beko, Mate, Veres, Daniel V, Mizsei, Reka, Ferdinandy, Peter, Csermely, Peter, Kovacs, Istvan A
Published in arXiv.org (01.11.2019)
Published in arXiv.org (01.11.2019)
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Journal Article
ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality
Szalay-Beko, Mate, Palotai, Robin, Szappanos, Balazs, Kovacs, Istvan A, Papp, Balazs, Csermely, Peter
Published in arXiv.org (02.12.2012)
Published in arXiv.org (02.12.2012)
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Journal Article
A systems genomics approach to uncover patient-specific pathogenic pathways in a complex disease
Brooks, Johanne, Modos, Dezso, Padhmanand Sudhakar, Fazekas, David, Zoufir, Azedine, Kapuy, Orsolya, Szalay-Beko, Mate, Madgwick, Matthew, Verstockt, Bram, Hall, Lindsay, Watson, Alastair, Tremelling, Mark, Parkes, Miles, Vermeire, Severine, Bender, Andreas, Carding, Simon, Korcsmaros, Tamas
Published in bioRxiv (04.07.2019)
Published in bioRxiv (04.07.2019)
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