Search Results - "Swenson, Luke C" :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

by Brumme, Zabrina L, John, Mina, Carlson, Jonathan M, Brumme, Chanson J, Chan, Dennison, Brockman, Mark A, Swenson, Luke C, Tao, Iris, Szeto, Sharon, Rosato, Pamela, Sela, Jennifer, Kadie, Carl M, Frahm, Nicole, Brander, Christian, Haas, David W, Riddler, Sharon A, Haubrich, Richard, Walker, Bruce D, Harrigan, P Richard, Heckerman, David, Mallal, Simon
Published in PloS one (19.08.2009)

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Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data

Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data

by Poon, Art F Y, Swenson, Luke C, Bunnik, Evelien M, Edo-Matas, Diana, Schuitemaker, Hanneke, van 't Wout, Angélique B, Harrigan, P Richard
Published in PLoS computational biology (01.11.2012)

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Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing

Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing

by Bunnik, Evelien M, Swenson, Luke C, Edo-Matas, Diana, Huang, Wei, Dong, Winnie, Frantzell, Arne, Petropoulos, Christos J, Coakley, Eoin, Schuitemaker, Hanneke, Harrigan, P Richard, van 't Wout, Angélique B
Published in PLoS pathogens (01.06.2011)

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Comparative Performances of HIV-1 RNA Load Assays at Low Viral Load Levels: Results of an International Collaboration

Comparative Performances of HIV-1 RNA Load Assays at Low Viral Load Levels: Results of an International Collaboration

by Swenson, Luke C, Cobb, Bryan, Geretti, Anna Maria, Harrigan, P Richard, Poljak, Mario, Seguin-Devaux, Carole, Verhofstede, Chris, Wirden, Marc, Amendola, Alessandra, Boni, Jurg, Bourlet, Thomas, Huder, Jon B, Karasi, Jean-Claude, Zidovec Lepej, Snjezana, Lunar, Maja M, Mukabayire, Odette, Schuurman, Rob, Tomazic, Janez, Van Laethem, Kristel, Vandekerckhove, Linos, Wensing, Annemarie M J
Published in Journal of Clinical Microbiology (01.02.2014)

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Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA

Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA

by Swenson, Luke C, Moores, Andrew, Low, Andrew J, Thielen, Alexander, Dong, Winnie, Woods, Conan, Jensen, Mark A, Wynhoven, Brian, Chan, Dennison, Glascock, Christopher, Harrigan, P Richard
Published in Journal of acquired immune deficiency syndromes (1999) (15.08.2010)

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Use of Cellular HIV DNA to Predict Virologic Response to Maraviroc: Performance of Population-Based and Deep Sequencing

Use of Cellular HIV DNA to Predict Virologic Response to Maraviroc: Performance of Population-Based and Deep Sequencing

by Swenson, Luke C., Dong, Winnie W. Y., Mo, Theresa, Demarest, James, Chapman, Doug, Ellery, Suzanne, Heera, Jayvant, Valdez, Hernan, Poon, Art F. Y., Harrigan, P. Richard
Published in Clinical infectious diseases (01.06.2013)

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Genotypic Analysis of the V3 Region of HIV from Virologic Nonresponders to Maraviroc-Containing Regimens Reveals Distinct Patterns of Failure

Genotypic Analysis of the V3 Region of HIV from Virologic Nonresponders to Maraviroc-Containing Regimens Reveals Distinct Patterns of Failure

by SWENSON, Luke C, CHUI, Celia K. S, JAMES, Ian, PORTSMOUTH, Simon, GOODRICH, James, HEERA, Jayvant, VALDEZ, Hernan, HARRIGAN, P. Richard, BRUMME, Chanson J, CHAN, Dennison, WOODS, Conan K, MO, Theresa, DONG, Winnie, CHAPMAN, Doug, LEWIS, Marilyn, DEMAREST, James F
Published in Antimicrobial Agents and Chemotherapy (01.12.2013)

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"Deep" sequencing accuracy and reproducibility using Roche/454 technology for inferring co-receptor usage in HIV-1

"Deep" sequencing accuracy and reproducibility using Roche/454 technology for inferring co-receptor usage in HIV-1

by Knapp, David J H F, McGovern, Rachel A, Poon, Art F Y, Zhong, Xiaoyin, Chan, Dennison, Swenson, Luke C, Dong, Winnie, Harrigan, P Richard
Published in PloS one (24.06.2014)

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Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing

Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing

by Lee, Guinevere Q, Swenson, Luke C, Poon, Art F Y, Martin, Jeffrey N, Hatano, Hiroyu, Deeks, Steven G, Harrigan, P Richard
Published in PloS one (26.09.2012)

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Results of External Quality Assessment for Proviral DNA Testing of HIV Tropism in the Maraviroc Switch Collaborative Study

Results of External Quality Assessment for Proviral DNA Testing of HIV Tropism in the Maraviroc Switch Collaborative Study

by Tu, Elise, Swenson, Luke C, Land, Sally, Pett, Sarah, Emery, Sean, Marks, Kat, Kelleher, Anthony D, Kaye, Steve, Kaiser, Rolf, Schuelter, Eugene, Harrigan, Richard
Published in Journal of Clinical Microbiology (01.07.2013)

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Technical and regulatory shortcomings of the TaqMan version 1 HIV viral load assay

Technical and regulatory shortcomings of the TaqMan version 1 HIV viral load assay

by Brumme, Chanson J, Swenson, Luke C, Wynhoven, Brian, Yip, Benita, Skinner, Stuart, Lima, Viviane Dias, Montaner, Julio S G, Harrigan, P Richard
Published in PloS one (24.08.2012)

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Factors Influencing the Sensitivity and Specificity of Conventional Sequencing in Human Immunodeficiency Virus Type 1 Tropism Testing

Factors Influencing the Sensitivity and Specificity of Conventional Sequencing in Human Immunodeficiency Virus Type 1 Tropism Testing

by Knapp, David J H F, McGovern, Rachel A, Dong, Winnie, Poon, Art F Y, Swenson, Luke C, Zhong, Xiaoyin, Woods, Conan K, Harrigan, P Richard
Published in Journal of Clinical Microbiology (01.02.2013)

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"Dynamic range" of inferred phenotypic HIV drug resistance values in clinical practice

"Dynamic range" of inferred phenotypic HIV drug resistance values in clinical practice

by Swenson, Luke C, Pollock, Graham, Wynhoven, Brian, Mo, Theresa, Dong, Winnie, Hogg, Robert S, Montaner, Julio S G, Harrigan, P Richard
Published in PloS one (24.02.2011)

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HIV drug resistance detected during low-level viraemia is associated with subsequent virologic failure

HIV drug resistance detected during low-level viraemia is associated with subsequent virologic failure

by SWENSON, Luke C, JEONG EUN MIN, WOODS, Conan K, CAI, Eric, LI, Jonathan Z, MONTANER, Julio S. G, HARRIGAN, P. Richard, GONZALEZ-SERNA, Alejandro
Published in AIDS (London) (15.05.2014)

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Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients

Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients

by Swenson, Luke C., Mo, Theresa, Dong, Winnie W.Y., Zhong, Xiaoyin, Woods, Conan K., Jensen, Mark A., Thielen, Alexander, Chapman, Douglass, Lewis, Marilyn, James, Ian, Heera, Jayvant, Valdez, Hernan, Harrigan, P. Richard
Published in The Journal of infectious diseases (15.01.2011)

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Next-generation sequencing to assess HIV tropism

Next-generation sequencing to assess HIV tropism

by Swenson, Luke C, Däumer, Martin, Paredes, Roger
Published in Current opinion in HIV & AIDS (01.09.2012)

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Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing

by Liang, Richard H, Mo, Theresa, Dong, Winnie, Lee, Guinevere Q, Swenson, Luke C, McCloskey, Rosemary M, Woods, Conan K, Brumme, Chanson J, Ho, Cynthia K Y, Schinkel, Janke, Joy, Jeffrey B, Harrigan, P Richard, Poon, Art F Y
Published in Nucleic acids research (08.07.2014)

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Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1

Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1

by Poon, Art F Y, Swenson, Luke C, Dong, Winnie W Y, Deng, Wenjie, Kosakovsky Pond, Sergei L, Brumme, Zabrina L, Mullins, James I, Richman, Douglas D, Harrigan, P Richard, Frost, Simon D W
Published in Molecular biology and evolution (01.04.2010)

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Reply to "Issues on results of the external quality assessment for proviral DNA testing of HIV-1 Tropism in the Maraviroc Switch collaborative study"

Reply to "Issues on results of the external quality assessment for proviral DNA testing of HIV-1 Tropism in the Maraviroc Switch collaborative study"

by Tu, Elise, Swenson, Luke C, Land, Sally, Pett, Sarah, Emery, Sean, Marks, Kat, Kelleher, Anthony D, Kaye, Steve, Kaiser, Rolf, Schuelter, Eugene, Harrigan, Richard
Published in Journal of clinical microbiology (01.12.2013)

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Risk of breast cancer with CXCR4-using HIV defined by V3 loop sequencing

Risk of breast cancer with CXCR4-using HIV defined by V3 loop sequencing

by Goedert, James J, Swenson, Luke C, Napolitano, Laura A, Haddad, Mojgan, Anastos, Kathryn, Minkoff, Howard, Young, Mary, Levine, Alexandra, Adeyemi, Oluwatoyin, Seaberg, Eric C, Aouizerat, Bradley, Rabkin, Charles S, Harrigan, P Richard, Hessol, Nancy A
Published in Journal of acquired immune deficiency syndromes (1999) (01.01.2015)

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