A Computational Pipeline for Accurate Prioritization of Protein‐Protein Binding Candidates in High‐Throughput Protein Libraries
Mondal, Arup, Singh, Bhumika, Felkner, Roland H., De Falco, Anna, Swapna, GVT, Montelione, Gaetano T., Roth, Monica J., Perez, Alberto
Published in Angewandte Chemie International Edition (10.06.2024)
Published in Angewandte Chemie International Edition (10.06.2024)
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A Computational Pipeline for Accurate Prioritization of Protein‐Protein Binding Candidates in High‐Throughput Protein Libraries
Mondal, Arup, Singh, Bhumika, Felkner, Roland H., De Falco, Anna, Swapna, GVT, Montelione, Gaetano T., Roth, Monica J., Perez, Alberto
Published in Angewandte Chemie (10.06.2024)
Published in Angewandte Chemie (10.06.2024)
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Sifting Through the Noise: A Computational Pipeline for Accurate Prioritization of Protein-Protein Binding Candidates in High-Throughput Protein Libraries
Mondal, Arup, Singh, Bhumika, Felkner, Roland H, De Falco, Anna, Swapna, Gvt, Montelione, Gaetano T, Roth, Monica J, Perez, Alberto
Published in bioRxiv (23.01.2024)
Published in bioRxiv (23.01.2024)
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Principles for designing proteins with cavities formed by curved β sheets
Marcos, Enrique, Basanta, Benjamin, Chidyausiku, Tamuka M., Tang, Yuefeng, Oberdorfer, Gustav, Liu, Gaohua, Swapna, G. V. T., Guan, Rongjin, Silva, Daniel-Adriano, Dou, Jiayi, Pereira, Jose Henrique, Xiao, Rong, Sankaran, Banumathi, Zwart, Peter H., Montelione, Gaetano T., Baker, David
Published in Science (American Association for the Advancement of Science) (13.01.2017)
Published in Science (American Association for the Advancement of Science) (13.01.2017)
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Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2
Huang, Yuanpeng Janet, Zhang, Ning, Bersch, Beate, Fidelis, Krzysztof, Inouye, Masayori, Ishida, Yojiro, Kryshtafovych, Andriy, Kobayashi, Naohiro, Kuroda, Yutaka, Liu, Gaohua, LiWang, Andy, Swapna, G.V.T, Wu, Nan, Yamazaki, Toshio, Montelione, Gaetano T.
Published in Proteins, structure, function, and bioinformatics (01.12.2021)
Published in Proteins, structure, function, and bioinformatics (01.12.2021)
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Protein structure prediction assisted with sparse NMR data in CASP13
Sala, Davide, Huang, Yuanpeng Janet, Cole, Casey A., Snyder, David A., Liu, Gaohua, Ishida, Yojiro, Swapna, G.V.T., Brock, Kelly P., Sander, Chris, Fidelis, Krzysztof, Kryshtafovych, Andriy, Inouye, Masayori, Tejero, Roberto, Valafar, Homayoun, Rosato, Antonio, Montelione, Gaetano T.
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
Published in Proteins, structure, function, and bioinformatics (01.12.2019)
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Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction
Aiyer, Sriram, Swapna, G.V.T., Malani, Nirav, Aramini, James M., Schneider, William M., Plumb, Matthew R., Ghanem, Mustafa, Larue, Ross C., Sharma, Amit, Studamire, Barbara, Kvaratskhelia, Mamuka, Bushman, Frederic D., Montelione, Gaetano T., Roth, Monica J.
Published in Nucleic acids research (01.05.2014)
Published in Nucleic acids research (01.05.2014)
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Multiple helical conformations of the helix‐turn‐helix region revealed by NOE‐restrained MD simulations of tryptophan aporepressor, TrpR
Harish, Balasubramanian, Swapna, G.V.T., Kornhaber, Gregory J., Montelione, Gaetano T., Carey, Jannette
Published in Proteins, structure, function, and bioinformatics (01.04.2017)
Published in Proteins, structure, function, and bioinformatics (01.04.2017)
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Cold-shock induced high-yield protein production in Escherichia coli
Inouye, Masayori, Qing, Guoliang, Ma, Li-Chung, Khorchid, Ahmad, Swapna, G V T, Mal, Tapas K, Takayama, Masanori Mitta, Xia, Bing, Phadtare, Sangita, Ke, Haiping, Acton, Thomas, Montelione, Gaetano T, Ikura, Mitsuhiko
Published in Nature biotechnology (01.07.2004)
Published in Nature biotechnology (01.07.2004)
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Solution NMR Structure of the Junction between Tropomyosin Molecules: Implications for Actin Binding and Regulation
Greenfield, Norma J., Huang, Yuanpeng Janet, Swapna, G.V.T., Bhattacharya, Aneerban, Rapp, Brian, Singh, Abhishek, Montelione, Gaetano T., Hitchcock-DeGregori, Sarah E.
Published in Journal of molecular biology (17.11.2006)
Published in Journal of molecular biology (17.11.2006)
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super(19)F NMR Reveals Multiple Conformations at the Dimer Interface of the Nonstructural Protein 1 Effector Domain from Influenza A Virus
Aramini, James M, Hamilton, Keith, Ma, Li-Chung, Swapna, GVT, Leonard, Paul G, Ladbury, John E, Krug, Robert M, Montelione, Gaetano T
Published in Structure (London) (01.04.2014)
Published in Structure (London) (01.04.2014)
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Conserved Surface Features Form the Double-stranded RNA Binding Site of Non-structural Protein 1 (NS1) from Influenza A and B Viruses
Yin, Cuifeng, Khan, Javed A., Swapna, G.V.T., Ertekin, Asli, Krug, Robert M., Tong, Liang, Montelione, Gaetano T.
Published in The Journal of biological chemistry (13.07.2007)
Published in The Journal of biological chemistry (13.07.2007)
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Structure of Antibacterial Peptide Microcin J25: A 21-Residue Lariat Protoknot
Bayro, Marvin J, Mukhopadhyay, Jayanta, Swapna, G. V. T, Huang, Janet Y, Ma, Li-Chung, Sineva, Elena, Dawson, Philip E, Montelione, Gaetano T, Ebright, Richard H
Published in Journal of the American Chemical Society (15.10.2003)
Published in Journal of the American Chemical Society (15.10.2003)
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Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium
Acton, Thomas B, Gunsalus, Kristin C, Xiao, Rong, Ma, Li Chung, Aramini, James, Baran, Michael C, Chiang, Yi-Wen, Climent, Teresa, Cooper, Bonnie, Denissova, Natalia G, Douglas, Shawn M, Everett, John K, Ho, Chi Kent, Macapagal, Daphne, Rajan, Paranji K, Shastry, Ritu, Shih, Liang-Yu, Swapna, G V T, Wilson, Michael, Wu, Margaret, Gerstein, Mark, Inouye, Masayori, Hunt, John F, Montelione, Gaetano T
Published in Methods in enzymology (2005)
Published in Methods in enzymology (2005)
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Comparisons of NMR Spectral Quality and Success in Crystallization Demonstrate that NMR and X-ray Crystallography Are Complementary Methods for Small Protein Structure Determination
Snyder, David A, Chen, Yang, Denissova, Natalia G, Acton, Thomas, Aramini, James M, Ciano, Melissa, Karlin, Richard, Liu, Jinfeng, Manor, Philip, Rajan, P. A, Rossi, Paolo, Swapna, G. V. T, Xiao, Rong, Rost, Burkhard, Hunt, John, Montelione, Gaetano T
Published in Journal of the American Chemical Society (30.11.2005)
Published in Journal of the American Chemical Society (30.11.2005)
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Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis
Aramini, James M., Sharma, Seema, Huang, Yuanpeng J., Swapna, G. V. T., Ho, Chi Kent, Shetty, Karishma, Cunningham, Kellie, Ma, Li-Chung, Zhao, Li, Owens, Leah A., Jiang, Mei, Xiao, Rong, Liu, Jinfeng, Baran, Michael C., Acton, Thomas B., Rost, Burkhard, Montelione, Gaetano T.
Published in Proteins, structure, function, and bioinformatics (01.07.2008)
Published in Proteins, structure, function, and bioinformatics (01.07.2008)
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Solution NMR Structure of Ribosome-binding Factor A (RbfA), A Cold-shock Adaptation Protein from Escherichia coli
Huang, Yuanpeng Janet, Swapna, G.V.T., Rajan, P.K., Ke, Haiping, Xia, Bing, Shukla, Kamal, Inouye, Masayori, Montelione, Gaetano T.
Published in Journal of molecular biology (21.03.2003)
Published in Journal of molecular biology (21.03.2003)
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The Structure of the Carboxyl Terminus of Striated α-Tropomyosin in Solution Reveals an Unusual Parallel Arrangement of Interacting α-Helices
Greenfield, Norma J, Swapna, G. V. T, Huang, Yuanpeng, Palm, Thomas, Graboski, Sarah, Montelione, Gaetano T, Hitchcock-DeGregori, Sarah E
Published in Biochemistry (Easton) (28.01.2003)
Published in Biochemistry (Easton) (28.01.2003)
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Automated protein fold determination using a minimal NMR constraint strategy
Zheng, Deyou, Huang, Yuanpeng J., Moseley, Hunter N.B., Xiao, Rong, Aramini, James, Swapna, G.V.T., Montelione, Gaetano T.
Published in Protein science (01.06.2003)
Published in Protein science (01.06.2003)
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