MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
McGibbon, Robert T., Beauchamp, Kyle A., Harrigan, Matthew P., Klein, Christoph, Swails, Jason M., Hernández, Carlos X., Schwantes, Christian R., Wang, Lee-Ping, Lane, Thomas J., Pande, Vijay S.
Published in Biophysical journal (20.10.2015)
Published in Biophysical journal (20.10.2015)
Get full text
Journal Article
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
Lee, Jumin, Cheng, Xi, Swails, Jason M, Yeom, Min Sun, Eastman, Peter K, Lemkul, Justin A, Wei, Shuai, Buckner, Joshua, Jeong, Jong Cheol, Qi, Yifei, Jo, Sunhwan, Pande, Vijay S, Case, David A, Brooks, Charles L, MacKerell, Alexander D, Klauda, Jeffery B, Im, Wonpil
Published in Journal of chemical theory and computation (12.01.2016)
Published in Journal of chemical theory and computation (12.01.2016)
Get full text
Journal Article
Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset
Shirts, Michael R., Klein, Christoph, Swails, Jason M., Yin, Jian, Gilson, Michael K., Mobley, David L., Case, David A., Zhong, Ellen D.
Published in Journal of computer-aided molecular design (01.01.2017)
Published in Journal of computer-aided molecular design (01.01.2017)
Get full text
Journal Article
Multidimensional Replica Exchange Molecular Dynamics Yields a Converged Ensemble of an RNA Tetranucleotide
Bergonzo, Christina, Henriksen, Niel M, Roe, Daniel R, Swails, Jason M, Roitberg, Adrian E, Cheatham, Thomas E
Published in Journal of chemical theory and computation (14.01.2014)
Published in Journal of chemical theory and computation (14.01.2014)
Get full text
Journal Article
Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix
Moriarty, Nigel W., Janowski, Pawel A., Swails, Jason M., Nguyen, Hai, Richardson, Jane S., Case, David A., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2020)
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2020)
Get full text
Journal Article
SPAM: A Simple Approach for Profiling Bound Water Molecules
Cui, Guanglei, Swails, Jason M, Manas, Eric S
Published in Journal of chemical theory and computation (10.12.2013)
Published in Journal of chemical theory and computation (10.12.2013)
Get full text
Journal Article
Erratum to: Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset
Shirts, Michael R., Klein, Christoph, Swails, Jason M., Yin, Jian, Gilson, Michael K., Mobley, David L., Case, David A., Zhong, Ellen D.
Published in Journal of computer-aided molecular design (01.08.2017)
Published in Journal of computer-aided molecular design (01.08.2017)
Get full text
Journal Article
pH-Dependent Mechanism of Nitric Oxide Release in Nitrophorins 2 and 4
Swails, Jason M, Meng, Yilin, Walker, F. Ann, Marti, Marcelo A, Estrin, Dario A, Roitberg, Adrian E
Published in The journal of physical chemistry. B (29.01.2009)
Published in The journal of physical chemistry. B (29.01.2009)
Get full text
Journal Article
Improved chemistry restraints for crystallographic refinement by integrating Amber molecular mechanics in Phenix
Case, David A., Janowski, Pawel A., Moriarty, Nigel W., Swails, Jason M., Adams, Paul D.
Published in Acta crystallographica. Section A, Foundations and advances (20.07.2018)
Published in Acta crystallographica. Section A, Foundations and advances (20.07.2018)
Get full text
Journal Article
Synthesis and characterization of κ-2- bis- N-heterocyclic carbene rhodium(I) catalysts: Application in enantioselective arylboronic acid addition to cyclohex-2-enones
Jeletic, Matthew S., Lowry, Roxy J., Swails, Jason M., Ghiviriga, Ion, Veige, Adam S.
Published in Journal of organometallic chemistry (01.10.2011)
Published in Journal of organometallic chemistry (01.10.2011)
Get full text
Journal Article
Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix
Moriarty, Nigel W., Janowski, Pawel A., Swails, Jason M., Nguyen, Hai, Richardson, Jane S., Case, David A., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (07.08.2019)
Get full text
Published in Acta crystallographica. Section D, Biological crystallography. (07.08.2019)
Journal Article
Communicating with and Controlling Load Control Systems
Bamberger, Matthew, Jones, Christopher M, Swails, Jason M, Nill, John B
Year of Publication 17.10.2024
Get full text
Year of Publication 17.10.2024
Patent
COMMUNICATING WITH AND CONTROLLING LOAD CONTROL SYSTEMS
NILL, JOHN B, SWAILS, JASON M, JONES, CHRISTOPHER M, BAMBERGER, MATTHEW
Year of Publication 30.04.2024
Get full text
Year of Publication 30.04.2024
Patent
COMMUNICATING WITH AND CONTROLLING LOAD CONTROL SYSTEMS
NILL, John B, SWAILS, Jason M, JONES, Christopher M, BAMBERGER, Matthew
Year of Publication 27.03.2024
Get full text
Year of Publication 27.03.2024
Patent
Communicating with and controlling load control systems
Bamberger, Matthew, Jones, Christopher M, Swails, Jason M, Nill, John B
Year of Publication 09.01.2024
Get full text
Year of Publication 09.01.2024
Patent