Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
Westholm, Jakub O, Miura, Pedro, Olson, Sara, Shenker, Sol, Joseph, Brian, Sanfilippo, Piero, Celniker, Susan E, Graveley, Brenton R, Lai, Eric C
Published in Cell reports (Cambridge) (11.12.2014)
Published in Cell reports (Cambridge) (11.12.2014)
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An Extracellular Interactome of Immunoglobulin and LRR Proteins Reveals Receptor-Ligand Networks
Özkan, Engin, Carrillo, Robert A., Eastman, Catharine L., Weiszmann, Richard, Waghray, Deepa, Johnson, Karl G., Zinn, Kai, Celniker, Susan E., Garcia, K. Christopher
Published in Cell (03.07.2013)
Published in Cell (03.07.2013)
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Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks
Wu, Siqi, Joseph, Antony, Hammonds, Ann S., Celniker, Susan E., Yu, Bin, Frise, Erwin
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2016)
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A Protein Complex Network of Drosophila melanogaster
Guruharsha, K.G., Rual, Jean-François, Zhai, Bo, Mintseris, Julian, Vaidya, Pujita, Vaidya, Namita, Beekman, Chapman, Wong, Christina, Rhee, David Y., Cenaj, Odise, McKillip, Emily, Shah, Saumini, Stapleton, Mark, Wan, Kenneth H., Yu, Charles, Parsa, Bayan, Carlson, Joseph W., Chen, Xiao, Kapadia, Bhaveen, VijayRaghavan, K., Gygi, Steven P., Celniker, Susan E., Obar, Robert A., Artavanis-Tsakonas, Spyros
Published in Cell (28.10.2011)
Published in Cell (28.10.2011)
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Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance
Chen, Kun, Luan, Xiaoting, Liu, Qisha, Wang, Jianwei, Chang, Xinxia, Snijders, Antoine M., Mao, Jian-Hua, Secombe, Julie, Dan, Zhou, Chen, Jian-Huan, Wang, Zibin, Dong, Xiao, Qiu, Chen, Chang, Xiaoai, Zhang, Dong, Celniker, Susan E., Liu, Xingyin
Published in Cell host & microbe (10.04.2019)
Published in Cell host & microbe (10.04.2019)
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Genome-wide identification of zero nucleotide recursive splicing in Drosophila
Duff, Michael O., Olson, Sara, Wei, Xintao, Garrett, Sandra C., Osman, Ahmad, Bolisetty, Mohan, Plocik, Alex, Celniker, Susan E., Graveley, Brenton R.
Published in Nature (London) (21.05.2015)
Published in Nature (London) (21.05.2015)
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The Release 6 reference sequence of the Drosophila melanogaster genome
Hoskins, Roger A, Carlson, Joseph W, Wan, Kenneth H, Park, Soo, Mendez, Ivonne, Galle, Samuel E, Booth, Benjamin W, Pfeiffer, Barret D, George, Reed A, Svirskas, Robert, Krzywinski, Martin, Schein, Jacqueline, Accardo, Maria Carmela, Damia, Elisabetta, Messina, Giovanni, Méndez-Lago, María, de Pablos, Beatriz, Demakova, Olga V, Andreyeva, Evgeniya N, Boldyreva, Lidiya V, Marra, Marco, Carvalho, A Bernardo, Dimitri, Patrizio, Villasante, Alfredo, Zhimulev, Igor F, Rubin, Gerald M, Karpen, Gary H, Celniker, Susan E
Published in Genome research (01.03.2015)
Published in Genome research (01.03.2015)
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Lessons from modENCODE
Brown, James B, Celniker, Susan E
Published in Annual review of genomics and human genetics (24.08.2015)
Published in Annual review of genomics and human genetics (24.08.2015)
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Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain
Dachet, Fabien, Brown, James B., Valyi-Nagy, Tibor, Narayan, Kunwar D., Serafini, Anna, Boley, Nathan, Gingeras, Thomas R., Celniker, Susan E., Mohapatra, Gayatry, Loeb, Jeffrey A.
Published in Scientific reports (23.03.2021)
Published in Scientific reports (23.03.2021)
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Journal Article
Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila
Smibert, Peter, Miura, Pedro, Westholm, Jakub O., Shenker, Sol, May, Gemma, Duff, Michael O., Zhang, Dayu, Eads, Brian D., Carlson, Joe, Brown, James B., Eisman, Robert C., Andrews, Justen, Kaufman, Thomas, Cherbas, Peter, Celniker, Susan E., Graveley, Brenton R., Lai, Eric C.
Published in Cell reports (Cambridge) (29.03.2012)
Published in Cell reports (Cambridge) (29.03.2012)
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Tools for neuroanatomy and neurogenetics in Drosophila
Pfeiffer, Barret D, Jenett, Arnim, Hammonds, Ann S, Ngo, Teri -T.B, Misra, Sima, Murphy, Christine, Scully, Audra, Carlson, Joseph W, Wan, Kenneth H, Laverty, Todd R, Mungall, Chris, Svirskas, Rob, Kadonaga, James T, Doe, Chris Q, Eisen, Michael B, Celniker, Susan E, Rubin, Gerald M
Published in Proceedings of the National Academy of Sciences - PNAS (15.07.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (15.07.2008)
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A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline
Bin, Jianhui, Obst-Huebl, Lieselotte, Mao, Jian-Hua, Nakamura, Kei, Geulig, Laura D., Chang, Hang, Ji, Qing, He, Li, De Chant, Jared, Kober, Zachary, Gonsalves, Anthony J., Bulanov, Stepan, Celniker, Susan E., Schroeder, Carl B., Geddes, Cameron G. R., Esarey, Eric, Simmons, Blake A., Schenkel, Thomas, Blakely, Eleanor A., Steinke, Sven, Snijders, Antoine M.
Published in Scientific reports (27.01.2022)
Published in Scientific reports (27.01.2022)
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Global analysis of patterns of gene expression during Drosophila embryogenesis
Tomancak, Pavel, Berman, Benjamin P, Beaton, Amy, Weiszmann, Richard, Kwan, Elaine, Hartenstein, Volker, Celniker, Susan E, Rubin, Gerald M
Published in Genome biology (01.01.2007)
Published in Genome biology (01.01.2007)
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DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila
Fisher, William W., Li, Jingyi Jessica, Hammonds, Ann S., Brown, James B., Pfeiffer, Barret D., Weiszmann, Richard, MacArthur, Stewart, Thomas, Sean, Stamatoyannopoulos, John A., Eisen, Michael B., Bickel, Peter J., Biggin, Mark D., Celniker, Susan E.
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2012)
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Genome-wide analysis of promoter architecture in Drosophila melanogaster
Hoskins, Roger A, Landolin, Jane M, Brown, James B, Sandler, Jeremy E, Takahashi, Hazuki, Lassmann, Timo, Yu, Charles, Booth, Benjamin W, Zhang, Dayu, Wan, Kenneth H, Yang, Li, Boley, Nathan, Andrews, Justen, Kaufman, Thomas C, Graveley, Brenton R, Bickel, Peter J, Carninci, Piero, Carlson, Joseph W, Celniker, Susan E
Published in Genome research (01.02.2011)
Published in Genome research (01.02.2011)
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Genetic and metabolic links between the murine microbiome and memory
Mao, Jian-Hua, Kim, Young-Mo, Zhou, Yan-Xia, Hu, Dehong, Zhong, Chenhan, Chang, Hang, Brislawn, Colin J, Fansler, Sarah, Langley, Sasha, Wang, Yunshan, Peisl, B Y Loulou, Celniker, Susan E, Threadgill, David W, Wilmes, Paul, Orr, Galya, Metz, Thomas O, Jansson, Janet K, Snijders, Antoine M
Published in Microbiome (17.04.2020)
Published in Microbiome (17.04.2020)
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Molecular and functional characterization of the Drosophila melanogaster conserved smORFome
Bosch, Justin A., Keith, Nathan, Escobedo, Felipe, Fisher, William W., LaGraff, James Thai, Rabasco, Jorden, Wan, Kenneth H., Weiszmann, Richard, Wu, Yulun, Hu, Yanhui, Kondo, Shu, Brown, James B., Perrimon, Norbert, Celniker, Susan E.
Published in Cell reports (Cambridge) (27.02.2024)
Published in Cell reports (Cambridge) (27.02.2024)
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Transcription Factor Networks in Drosophila melanogaster
Rhee, David Y., Cho, Dong-Yeon, Zhai, Bo, Slattery, Matthew, Ma, Lijia, Mintseris, Julian, Wong, Christina Y., White, Kevin P., Celniker, Susan E., Przytycka, Teresa M., Gygi, Steven P., Obar, Robert A., Artavanis-Tsakonas, Spyros
Published in Cell reports (Cambridge) (25.09.2014)
Published in Cell reports (Cambridge) (25.09.2014)
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Journal Article
Molecular and functional characterization of the Drosophila melanogaster conserved smORFome
Bosch, Justin A., Keith, Nathan, Escobedo, Felipe, Fisher, William W., LaGraff, James Thai, Rabasco, Jorden, Wan, Kenneth H., Weiszmann, Richard, Wu, Yulun, Hu, Yanhui, Kondo, Shu, Brown, James B., Perrimon, Norbert, Celniker, Susan E.
Published in Cell reports (Cambridge) (28.11.2023)
Published in Cell reports (Cambridge) (28.11.2023)
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