Improved repeat identification and masking in Dipterans
Smith, Christopher D., Edgar, Robert C., Yandell, Mark D., Smith, Douglas R., Celniker, Susan E., Myers, Eugene W., Karpen, Gary H.
Published in Gene (01.03.2007)
Published in Gene (01.03.2007)
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Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots
Langley, Sasha, Eng, Thomas, Wan, Kenneth H, Herbert, Robin A, Klein, Andrew P, Yoshikuni, Yasuo, Tringe, Susannah G, Brown, James B, Celniker, Susan E, Mortimer, Jenny C, Mukhopadhyay, Aindrila
Published in Microbiology resource announcements (12.09.2019)
Published in Microbiology resource announcements (12.09.2019)
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Evolution of the homeobox complex in the Diptera
Lewis, Edward B., Pfeiffer, Barret D., Mathog, David R., Celniker, Susan E.
Published in Current biology (05.08.2003)
Published in Current biology (05.08.2003)
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High-throughput plasmid cDNA library screening
Celniker, Susan E, Wan, Kenneth H, Yu, Charles, George, Reed A, Carlson, Joseph W, Hoskins, Roger A, Svirskas, Robert, Stapleton, Mark
Published in Nature protocols (01.07.2006)
Published in Nature protocols (01.07.2006)
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Identification and analysis of U5 snRNA variants in Drosophila
Chen, Li, Lullo, Dennis J, Ma, Enbo, Celniker, Susan E, Rio, Donald C, Doudna, Jennifer A
Published in RNA (Cambridge) (01.10.2005)
Published in RNA (Cambridge) (01.10.2005)
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Phylogenetic and Genomewide Analyses Suggest a Functional Relationship Between kayak, the Drosophila Fos Homolog, and fig, a Predicted Protein Phosphatase 2C Nested Within a kayak Intron
Hudson, S.G, Garrett, M.J, Carlson, J.W, Micklem, G, Celniker, S.E, Goldstein, E.S, Newfeld, S.J
Published in Genetics (Austin) (01.11.2007)
Published in Genetics (Austin) (01.11.2007)
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Journal Article
Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships
Kudron, Michelle, Gevirtzman, Louis, Victorsen, Alec, Lear, Bridget C, Gao, Jiahao, Xu, Jinrui, Samanta, Swapna, Frink, Emily, Tran-Pearson, Adri, Huynh, Chau, Vafeados, Dionne, Hammonds, Ann, Fisher, William, Wall, Martha, Wesseling, Greg, Hernandez, Vanessa, Lin, Zhichun, Kasparian, Mary, White, Kevin, Allada, Ravi, Gerstein, Mark, Hillier, LaDeana, Celniker, Susan E, Reinke, Valerie, Waterston, Robert H
Published in bioRxiv (20.01.2024)
Published in bioRxiv (20.01.2024)
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Paper
Correction: Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
Li, Xiao-yong, MacArthur, Stewart, Bourgon, Richard, Nix, David, Pollard, Daniel A, Iyer, Venky N, Hechmer, Aaron, Simirenko, Lisa, Stapleton, Mark, Hendriks, Cris L. Luengo, Chu, Hou Cheng, Ogawa, Nobuo, Inwood, William, Sementchenko, Victor, Beaton, Amy, Weiszmann, Richard, Celniker, Susan E, Knowles, David W, Gingeras, Tom, Speed, Terence P, Eisen, Michael B, Biggin, Mark D
Published in PLoS biology (01.07.2008)
Published in PLoS biology (01.07.2008)
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Journal Article
Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?
Carvalho, A Bernardo, Vibranovski, Maria D, Carlson, Joseph W, Celniker, Susan E, Hoskins, Roger A, Rubin, Gerald M, Sutton, Granger G, Adams, Mark D, Myers, Eugene W, Clark, Andrew G
Published in Genetica (01.03.2003)
Published in Genetica (01.03.2003)
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Journal Article
Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships
Kudron, Michelle, Gewirtzman, Louis, Victorsen, Alec, Lear, Bridget C, Vafeados, Dionne, Gao, Jiahao, Xu, Jinrui, Samanta, Swapna, Frink, Emily, Tran-Pearson, Adri, Hyunh, Chau, Hammonds, Ann, Fisher, William, Wall, Martha L, Wesseling, Greg, Hernandez, Vanessa, Lin, Zhichun, Kasparian, Mary, White, Kevin P, Allada, Ravi, Gerstein, Mark, Hillier, LaDeana, Celniker, Susan E, Reinke, Valerie, Waterston, Robert
Published in Genome research (22.10.2024)
Published in Genome research (22.10.2024)
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Journal Article
Comparative analysis of the transcriptome across distant species
Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A., Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak H., Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J., Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R., Waterston, Robert
Published in Nature (London) (28.08.2014)
Published in Nature (London) (28.08.2014)
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Identification of a Drosophila muscle development gene with structural homology to mammalian early growth response transcription factors
Lee, J.C, VijayRaghavan, K, Celniker, S.E, Tanouye, M.A
Published in Proceedings of the National Academy of Sciences - PNAS (24.10.1995)
Published in Proceedings of the National Academy of Sciences - PNAS (24.10.1995)
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Evolution of genes and genomes on the Drosophila phylogeny
Clark, Andrew G, Eisen, Michael B, Smith, Douglas R, Bergman, Casey M, Oliver, Brian, Markow, Therese A, Kaufman, Thomas C, Kellis, Manolis, Gelbart, William, Iyer, Venky N, Pollard, Daniel A, Sackton, Timothy B, Larracuente, Amanda M, Singh, Nadia D, Abad, Jose P, Abt, Dawn N, Adryan, Boris, Aguade, Montserrat, Akashi, Hiroshi, Anderson, Wyatt W, Aquadro, Charles F, Ardell, David H, Arguello, Roman, Artieri, Carlo G, Barbash, Daniel A, Barker, Daniel, Barsanti, Paolo, Batterham, Phil, Batzoglou, Serafim, Begun, Dave, Bhutkar, Arjun, Blanco, Enrico, Bosak, Stephanie A, Bradley, Robert K, Brand, Adrianne D, Brent, Michael R, Brooks, Angela N, Brown, Randall H, Butlin, Roger K, Caggese, Corrado, Calvi, Brian R, Bernardo de Carvalho, A, Caspi, Anat, Castrezana, Sergio, Celniker, Susan E, Chang, Jean L, Chapple, Charles, Chatterji, Sourav, Chinwalla, Asif, Civetta, Alberto, Clifton, Sandra W, Comeron, Josep M, Costello, James C, Coyne, Jerry A, Daub, Jennifer, David, Robert G, Delcher, Arthur L, Delehaunty, Kim, Do, Chuong B, Ebling, Heather, Edwards, Kevin, Eickbush, Thomas, Evans, Jay D, Filipski, Alan, Findeiss, Sven, Freyhult, Eva, Fulton, Lucinda, Fulton, Robert, Garcia, Ana C L, Gardiner, Anastasia, Garfield, David A, Garvin, Barry E, Gibson, Greg, Gilbert, Don, Gnerre, Sante, Godfrey, Jennifer, Good, Robert, Gotea, Valer, Gravely, Brenton, Greenberg, Anthony J, Griffiths-Jones, Sam, Gross, Samuel, Guigo, Roderic, Gustafson, Erik A, Haerty, Wilfried, Hahn, Matthew W, Halligan, Daniel L, Halpern, Aaron L, Halter, Gillian M, Han, Mira V, Heger, Andreas, Hillier, LaDeana, Hinrichs, Angie S, Holmes, Ian, Hoskins, Roger A, Hubisz, Melissa J, Hultmark, Dan, Huntley, Melanie A, Jaffe, David B, Jagadeeshan, Santosh
Published in Nature (08.11.2007)
Published in Nature (08.11.2007)
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SF3B1 Gene Expression in Erythroid Cells Is Regulated By Intron Retention Via a Posttranscriptional Mechanism Involving Cryptic Exons Proposed to Function As Splicing Decoys
Parra, Marilyn, Booth, Benjamin W, Yeo, Gene W, Weiszmann, Richard, Celniker, Susan E, Brown, James B, Conboy, John G
Published in Blood (08.12.2017)
Published in Blood (08.12.2017)
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Comparative validation of the D. melanogaster modENCODE transcriptome annotation
Chen, Zhen-Xia, Sturgill, David, Qu, Jiaxin, Jiang, Huaiyang, Park, Soo, Boley, Nathan, Suzuki, Ana Maria, Fletcher, Anthony R, Plachetzki, David C, FitzGerald, Peter C, Artieri, Carlo G, Atallah, Joel, Barmina, Olga, Brown, James B, Blankenburg, Kerstin P, Clough, Emily, Dasgupta, Abhijit, Gubbala, Sai, Han, Yi, Jayaseelan, Joy C, Kalra, Divya, Kim, Yoo-Ah, Kovar, Christie L, Lee, Sandra L, Li, Mingmei, Malley, James D, Malone, John H, Mathew, Tittu, Mattiuzzo, Nicolas R, Munidasa, Mala, Muzny, Donna M, Ongeri, Fiona, Perales, Lora, Przytycka, Teresa M, Pu, Ling-Ling, Robinson, Garrett, Thornton, Rebecca L, Saada, Nehad, Scherer, Steven E, Smith, Harold E, Vinson, Charles, Warner, Crystal B, Worley, Kim C, Wu, Yuan-Qing, Zou, Xiaoyan, Cherbas, Peter, Kellis, Manolis, Eisen, Michael B, Piano, Fabio, Kionte, Karin, Fitch, David H, Sternberg, Paul W, Cutter, Asher D, Duff, Michael O, Hoskins, Roger A, Graveley, Brenton R, Gibbs, Richard A, Bickel, Peter J, Kopp, Artyom, Carninci, Piero, Celniker, Susan E, Oliver, Brian, Richards, Stephen
Published in Genome research (01.07.2014)
Published in Genome research (01.07.2014)
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