Machine learning analysis of whole mouse brain vasculature
Todorov, Mihail Ivilinov, Paetzold, Johannes Christian, Schoppe, Oliver, Tetteh, Giles, Shit, Suprosanna, Efremov, Velizar, Todorov-Völgyi, Katalin, Düring, Marco, Dichgans, Martin, Piraud, Marie, Menze, Bjoern, Ertürk, Ali
Published in Nature methods (01.04.2020)
Published in Nature methods (01.04.2020)
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Journal Article
An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset
Payette, Kelly, de Dumast, Priscille, Kebiri, Hamza, Ezhov, Ivan, Paetzold, Johannes C., Shit, Suprosanna, Iqbal, Asim, Khan, Romesa, Kottke, Raimund, Grehten, Patrice, Ji, Hui, Lanczi, Levente, Nagy, Marianna, Beresova, Monika, Nguyen, Thi Dao, Natalucci, Giancarlo, Karayannis, Theofanis, Menze, Bjoern, Bach Cuadra, Meritxell, Jakab, Andras
Published in Scientific data (06.07.2021)
Published in Scientific data (06.07.2021)
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Journal Article
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models
Ezhov, Ivan, Mot, Tudor, Shit, Suprosanna, Lipkova, Jana, Paetzold, Johannes C., Kofler, Florian, Pellegrini, Chantal, Kollovieh, Marcel, Navarro, Fernando, Li, Hongwei, Metz, Marie, Wiestler, Benedikt, Menze, Bjoern
Published in IEEE transactions on medical imaging (01.05.2022)
Published in IEEE transactions on medical imaging (01.05.2022)
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Journal Article
Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM challenge
Timmins, Kimberley M., van der Schaaf, Irene C., Bennink, Edwin, Ruigrok, Ynte M., An, Xingle, Baumgartner, Michael, Bourdon, Pascal, De Feo, Riccardo, Noto, Tommaso Di, Dubost, Florian, Fava-Sanches, Augusto, Feng, Xue, Giroud, Corentin, Group, Inteneural, Hu, Minghui, Jaeger, Paul F., Kaiponen, Juhana, Klimont, Michał, Li, Yuexiang, Li, Hongwei, Lin, Yi, Loehr, Timo, Ma, Jun, Maier-Hein, Klaus H., Marie, Guillaume, Menze, Bjoern, Richiardi, Jonas, Rjiba, Saifeddine, Shah, Dhaval, Shit, Suprosanna, Tohka, Jussi, Urruty, Thierry, Walińska, Urszula, Yang, Xiaoping, Yang, Yunqiao, Yin, Yin, Velthuis, Birgitta K., Kuijf, Hugo J.
Published in NeuroImage (Orlando, Fla.) (01.09.2021)
Published in NeuroImage (Orlando, Fla.) (01.09.2021)
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Journal Article
AutoImplant 2020-First MICCAI Challenge on Automatic Cranial Implant Design
Li, Jianning, Pimentel, Pedro, Szengel, Angelika, Ehlke, Moritz, Lamecker, Hans, Zachow, Stefan, Estacio, Laura, Doenitz, Christian, Ramm, Heiko, Shi, Haochen, Chen, Xiaojun, Matzkin, Franco, Newcombe, Virginia, Ferrante, Enzo, Jin, Yuan, Ellis, David G., Aizenberg, Michele R., Kodym, Oldrich, Spanel, Michal, Herout, Adam, Mainprize, James G., Fishman, Zachary, Hardisty, Michael R., Bayat, Amirhossein, Shit, Suprosanna, Wang, Bomin, Liu, Zhi, Eder, Matthias, Pepe, Antonio, Gsaxner, Christina, Alves, Victor, Zefferer, Ulrike, von Campe, Gord, Pistracher, Karin, Schafer, Ute, Schmalstieg, Dieter, Menze, Bjoern H., Glocker, Ben, Egger, Jan
Published in IEEE transactions on medical imaging (01.09.2021)
Published in IEEE transactions on medical imaging (01.09.2021)
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Journal Article
Machine Learning Analysis of Human Skin by Optoacoustic Mesoscopy for Automated Extraction of Psoriasis and Aging Biomarkers
He, Hailong, Paetzold, Johannes C., Borner, Nils, Riedel, Erik, Gerl, Stefan, Schneider, Simon, Fisher, Chiara, Ezhov, Ivan, Shit, Suprosanna, Li, Hongwei, Ruckert, Daniel, Aguirre, Juan, Biedermann, Tilo, Darsow, Ulf, Menze, Bjoern, Ntziachristos, Vasilis
Published in IEEE transactions on medical imaging (01.06.2024)
Published in IEEE transactions on medical imaging (01.06.2024)
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Journal Article
Automated claustrum segmentation in human brain MRI using deep learning
Li, Hongwei, Menegaux, Aurore, Schmitz‐Koep, Benita, Neubauer, Antonia, Bäuerlein, Felix J. B., Shit, Suprosanna, Sorg, Christian, Menze, Bjoern, Hedderich, Dennis
Published in Human brain mapping (15.12.2021)
Published in Human brain mapping (15.12.2021)
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Journal Article
Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling
Sekuboyina, Anjany, Irmai, Jannik, Shit, Suprosanna, Kirschke, Jan, Andres, Bjoern, Menze, Bjoern
Published in 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) (18.04.2023)
Published in 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) (18.04.2023)
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Conference Proceeding
Robust, Primitive, and Unsupervised Quality Estimation for Segmentation Ensembles
Kofler, Florian, Ezhov, Ivan, Fidon, Lucas, Pirkl, Carolin M, Paetzold, Johannes C, Burian, Egon, Pati, Sarthak, El Husseini, Malek, Navarro, Fernando, Shit, Suprosanna, Kirschke, Jan, Bakas, Spyridon, Zimmer, Claus, Wiestler, Benedikt, Menze, Bjoern H
Published in Frontiers in neuroscience (30.12.2021)
Published in Frontiers in neuroscience (30.12.2021)
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Journal Article
AI-based detection of contrast-enhancing MRI lesions in patients with multiple sclerosis
Schlaeger, Sarah, Shit, Suprosanna, Eichinger, Paul, Hamann, Marco, Opfer, Roland, Krüger, Julia, Dieckmeyer, Michael, Schön, Simon, Mühlau, Mark, Zimmer, Claus, Kirschke, Jan S., Wiestler, Benedikt, Hedderich, Dennis M.
Published in Insights into imaging (16.07.2023)
Published in Insights into imaging (16.07.2023)
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Journal Article
Focused Decoding Enables 3D Anatomical Detection by Transformers
Wittmann, Bastian, Navarro, Fernando, Suprosanna Shit, Menze, Bjoern
Published in arXiv.org (26.02.2023)
Published in arXiv.org (26.02.2023)
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Paper
Journal Article
Topologically Faithful Multi-class Segmentation in Medical Images
Berger, Alexander H, Stucki, Nico, Lux, Laurin, Buergin, Vincent, Suprosanna Shit, Banaszak, Anna, Rueckert, Daniel, Bauer, Ulrich, Paetzold, Johannes C
Published in arXiv.org (09.10.2024)
Published in arXiv.org (09.10.2024)
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Journal Article
Enhancing Interpretability of Vertebrae Fracture Grading using Human-interpretable Prototypes
Sinhamahapatra, Poulami, Suprosanna Shit, Sekuboyina, Anjany, Husseini, Malek, Schinz, David, Lenhart, Nicolas, Menze, Joern, Kirschke, Jan, Roscher, Karsten, Guennemann, Stephan
Published in arXiv.org (31.07.2024)
Published in arXiv.org (31.07.2024)
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Paper
Journal Article
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge
Lucas Fidon, Suprosanna Shit, Ezhov, Ivan, Paetzold, Johannes C, Ourselin, Sébastien, Vercauteren, Tom
Published in arXiv.org (24.12.2021)
Published in arXiv.org (24.12.2021)
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Journal Article
clDice -- A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation
Suprosanna Shit, Paetzold, Johannes C, Sekuboyina, Anjany, Ezhov, Ivan, Unger, Alexander, Zhylka, Andrey, Josien P W Pluim, Bauer, Ulrich, Menze, Bjoern H
Published in arXiv.org (15.07.2022)
Published in arXiv.org (15.07.2022)
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Journal Article
blob loss: instance imbalance aware loss functions for semantic segmentation
Kofler, Florian, Suprosanna Shit, Ezhov, Ivan, Lucas Fidon, Horvath, Izabela, Al-Maskari, Rami, Li, Hongwei, Bhatia, Harsharan, Loehr, Timo, Piraud, Marie, Erturk, Ali, Kirschke, Jan, Peeken, Jan C, Vercauteren, Tom, Zimmer, Claus, Wiestler, Benedikt, Menze, Bjoern
Published in arXiv.org (06.06.2023)
Published in arXiv.org (06.06.2023)
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Journal Article
Automated Claustrum Segmentation in Human Brain MRI Using Deep Learning
Li, Hongwei, Menegaux, Aurore, Schmitz-Koep, Benita, Neubauer, Antonia, Felix JB Bäuerlein, Suprosanna Shit, Sorg, Christian, Menze, Bjoern, Hedderich, Dennis
Published in arXiv.org (23.05.2023)
Published in arXiv.org (23.05.2023)
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Journal Article