Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia
Merker, Matthias, Barbier, Maxime, Cox, Helen, Rasigade, Jean-Philippe, Feuerriegel, Silke, Kohl, Thomas Andreas, Diel, Roland, Borrell, Sonia, Gagneux, Sebastien, Nikolayevskyy, Vladyslav, Andres, Sönke, Nübel, Ulrich, Supply, Philip, Wirth, Thierry, Niemann, Stefan
Published in eLife (30.10.2018)
Published in eLife (30.10.2018)
Get full text
Journal Article
Evaluation and Strategy for Use of MIRU-VNTRplus, a Multifunctional Database for Online Analysis of Genotyping Data and Phylogenetic Identification of Mycobacterium tuberculosis Complex Isolates
Allix-Béguec, Caroline, Harmsen, Dag, Weniger, Thomas, Supply, Philip, Niemann, Stefan
Published in Journal of Clinical Microbiology (01.08.2008)
Published in Journal of Clinical Microbiology (01.08.2008)
Get full text
Journal Article
Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study
Roetzer, Andreas, Diel, Roland, Kohl, Thomas A, Rückert, Christian, Nübel, Ulrich, Blom, Jochen, Wirth, Thierry, Jaenicke, Sebastian, Schuback, Sieglinde, Rüsch-Gerdes, Sabine, Supply, Philip, Kalinowski, Jörn, Niemann, Stefan
Published in PLoS medicine (01.02.2013)
Published in PLoS medicine (01.02.2013)
Get full text
Journal Article
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region
Ngabonziza, Jean Claude Semuto, Loiseau, Chloé, Marceau, Michael, Jouet, Agathe, Menardo, Fabrizio, Tzfadia, Oren, Antoine, Rudy, Niyigena, Esdras Belamo, Mulders, Wim, Fissette, Kristina, Diels, Maren, Gaudin, Cyril, Duthoy, Stéphanie, Ssengooba, Willy, André, Emmanuel, Kaswa, Michel K, Habimana, Yves Mucyo, Brites, Daniela, Affolabi, Dissou, Mazarati, Jean Baptiste, de Jong, Bouke Catherine, Rigouts, Leen, Gagneux, Sebastien, Meehan, Conor Joseph, Supply, Philip
Published in Nature communications (09.06.2020)
Published in Nature communications (09.06.2020)
Get full text
Journal Article
Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs
Jouet, Agathe, Gaudin, Cyril, Badalato, Nelly, Allix-Béguec, Caroline, Duthoy, Stéphanie, Ferré, Alice, Diels, Maren, Laurent, Yannick, Contreras, Sandy, Feuerriegel, Silke, Niemann, Stefan, André, Emmanuel, Kaswa, Michel K, Tagliani, Elisa, Cabibbe, Andrea, Mathys, Vanessa, Cirillo, Daniela, de Jong, Bouke C, Rigouts, Leen, Supply, Philip
Published in The European respiratory journal (01.03.2021)
Published in The European respiratory journal (01.03.2021)
Get full text
Journal Article
Rapid genomic first- and second-line drug resistance prediction from clinical Mycobacterium tuberculosis specimens using Deeplex-MycTB
Feuerriegel, Silke, Kohl, Thomas A, Utpatel, Christian, Andres, Sönke, Maurer, Florian P, Heyckendorf, Jan, Jouet, Agathe, Badalato, Nelly, Foray, Lynda, Fouad Kamara, Rashidatu, Conteh, Osman S, Supply, Philip, Niemann, Stefan
Published in The European respiratory journal (01.01.2021)
Published in The European respiratory journal (01.01.2021)
Get full text
Journal Article
Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria
Boritsch, Eva C., Khanna, Varun, Pawlik, Alexandre, Honoré, Nadine, Navas, Victor H., Ma, Laurence, Bouchier, Christiane, Seemann, Torsten, Supply, Philip, Stinear, Timothy P., Brosch, Roland
Published in Proceedings of the National Academy of Sciences - PNAS (30.08.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (30.08.2016)
Get full text
Journal Article
Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis
Merker, Matthias, Rasigade, Jean-Philippe, Barbier, Maxime, Cox, Helen, Feuerriegel, Silke, Kohl, Thomas A, Shitikov, Egor, Klaos, Kadri, Gaudin, Cyril, Antoine, Rudy, Diel, Roland, Borrell, Sonia, Gagneux, Sebastien, Nikolayevskyy, Vladyslav, Andres, Sönke, Crudu, Valeriu, Supply, Philip, Niemann, Stefan, Wirth, Thierry
Published in Nature communications (30.08.2022)
Published in Nature communications (30.08.2022)
Get full text
Journal Article
Newly Identified Mycobacterium africanum Lineage 10, Central Africa
Guyeux, Christophe, Senelle, Gaetan, Le Meur, Adrien, Supply, Philip, Gaudin, Cyril, Phelan, Jody E, Clark, Taane G, Rigouts, Leen, de Jong, Bouke, Sola, Christophe, Refrégier, Guislaine
Published in Emerging infectious diseases (01.03.2024)
Published in Emerging infectious diseases (01.03.2024)
Get full text
Journal Article
Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
Pankhurst, Louise J, Del Ojo Elias, Carlos, Votintseva, Antonina A, Walker, Timothy M, Cole, Kevin, Davies, Jim, Fermont, Jilles M, Gascoyne-Binzi, Deborah M, Kohl, Thomas A, Kong, Clare, Lemaitre, Nadine, Niemann, Stefan, Paul, John, Rogers, Thomas R, Roycroft, Emma, Smith, E Grace, Supply, Philip, Tang, Patrick, Wilcox, Mark H, Wordsworth, Sarah, Wyllie, David, Xu, Li, Crook, Derrick W
Published in The lancet respiratory medicine (01.01.2016)
Published in The lancet respiratory medicine (01.01.2016)
Get more information
Journal Article
Origin, spread and demography of the Mycobacterium tuberculosis complex
Wirth, Thierry, Hildebrand, Falk, Allix-Béguec, Caroline, Wölbeling, Florian, Kubica, Tanja, Kremer, Kristin, van Soolingen, Dick, Rüsch-Gerdes, Sabine, Locht, Camille, Brisse, Sylvain, Meyer, Axel, Supply, Philip, Niemann, Stefan
Published in PLoS pathogens (01.09.2008)
Published in PLoS pathogens (01.09.2008)
Get full text
Journal Article
Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis
Supply, Philip, Allix, Caroline, Lesjean, Sarah, Cardoso-Oelemann, Mara, Rüsch-Gerdes, Sabine, Willery, Eve, Savine, Evgueni, Haas, Petra de, Deutekom, Henk van, Roring, Solvig, Bifani, Pablo, Kurepina, Natalia, Kreiswirth, Barry, Sola, Christophe, Rastogi, Nalin, Vatin, Vincent, Gutierrez, Maria Cristina, Fauville, Maryse, Niemann, Stefan, Skuce, Robin, Kremer, Kristin, Locht, Camille, Soolingen, Dick van
Published in Journal of Clinical Microbiology (01.12.2006)
Published in Journal of Clinical Microbiology (01.12.2006)
Get full text
Journal Article
Three-Year Population-Based Evaluation of Standardized Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis
Allix-Béguec, Caroline, Fauville-Dufaux, Maryse, Supply, Philip
Published in Journal of Clinical Microbiology (01.04.2008)
Published in Journal of Clinical Microbiology (01.04.2008)
Get full text
Journal Article
Proposal of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat Loci for Subtyping of Mycobacterium tuberculosis Beijing Isolates
Allix-Béguec, Caroline, Wahl, Céline, Hanekom, Madeleine, Nikolayevskyy, Vladyslav, Drobniewski, Francis, Maeda, Shinji, Campos-Herrero, Isolina, Mokrousov, Igor, Niemann, Stefan, Kontsevaya, Irina, Rastogi, Nalin, Samper, Sofia, Sng, Li-Hwei, Warren, Robin M, Supply, Philip
Published in Journal of Clinical Microbiology (01.01.2014)
Published in Journal of Clinical Microbiology (01.01.2014)
Get full text
Journal Article
Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis
Gutierrez, M Cristina, Brisse, Sylvain, Brosch, Roland, Fabre, Michel, Omaïs, Bahia, Marmiesse, Magali, Supply, Philip, Vincent, Veronique
Published in PLoS pathogens (01.09.2005)
Published in PLoS pathogens (01.09.2005)
Get full text
Journal Article
Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation
Levillain, Florence, Poquet, Yannick, Mallet, Ludovic, Mazères, Serge, Marceau, Michael, Brosch, Roland, Bange, Franz-Christoph, Supply, Philip, Magalon, Axel, Neyrolles, Olivier
Published in PLoS pathogens (01.11.2017)
Published in PLoS pathogens (01.11.2017)
Get full text
Journal Article
A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex
Yenew, Bazezew, Ghodousi, Arash, Diriba, Getu, Tesfaye, Ephrem, Cabibbe, Andrea Maurizio, Amare, Misikir, Moga, Shewki, Alemu, Ayinalem, Dagne, Binyam, Sinshaw, Waganeh, Mollalign, Hilina, Meaza, Abyot, Tadesse, Mengistu, Gamtesa, Dinka Fikadu, Abebaw, Yeshiwork, Seid, Getachew, Zerihun, Betselot, Getu, Melak, Chiacchiaretta, Matteo, Gaudin, Cyril, Marceau, Michael, Didelot, Xavier, Tolera, Getachew, Abdella, Saro, Kebede, Abebaw, Getahun, Muluwork, Mehammed, Zemedu, Supply, Philip, Cirillo, Daniela Maria
Published in Nature communications (18.11.2023)
Published in Nature communications (18.11.2023)
Get full text
Journal Article
Zoonotic tuberculosis in humans assessed by next-generation sequencing: an 18-month nationwide study in Lebanon
El Achkar, Salam, Demanche, Christine, Osman, Marwan, Rafei, Rayane, Ismail, Mohamad Bachar, Gaudin, Cyril, Duthoy, Stéphanie, De Matos, Frédérique, Yaacoub, Hiam, Pinçon, Claire, Hamze, Monzer, Supply, Philip
Published in The European respiratory journal (01.01.2020)
Published in The European respiratory journal (01.01.2020)
Get full text
Journal Article
New Variable-Number Tandem-Repeat Markers for Typing Mycobacterium avium subsp. paratuberculosis and M. avium Strains: Comparison with IS900 and IS1245 Restriction Fragment Length Polymorphism Typing
Thibault, Virginie C, Grayon, Maggy, Boschiroli, Maria Laura, Hubbans, Christine, Overduin, Pieter, Stevenson, Karen, Gutierrez, Maria Cristina, Supply, Philip, Biet, Franck
Published in Journal of Clinical Microbiology (01.08.2007)
Published in Journal of Clinical Microbiology (01.08.2007)
Get full text
Journal Article
Drug-Resistant Tuberculosis, Lebanon, 2016 - 2017
El Achkar, Salam, Demanche, Christine, Osman, Marwan, Rafei, Rayane, Ismail, Mohamad Bachar, Yaacoub, Hiam, Pinçon, Claire, Duthoy, Stéphanie, De Matos, Frédérique, Gaudin, Cyril, Trovato, Alberto, Cirillo, Daniela M, Hamze, Monzer, Supply, Philip
Published in Emerging infectious diseases (01.03.2019)
Published in Emerging infectious diseases (01.03.2019)
Get full text
Journal Article