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The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
Shi, Leming, Jones, Wendell D, Jensen, Roderick V, Harris, Stephen C, Perkins, Roger G, Goodsaid, Federico M, Guo, Lei, Croner, Lisa J, Boysen, Cecilie, Fang, Hong, Qian, Feng, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick J, Fan, Xiao-hui, Frueh, Felix W, Fuscoe, James C, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest S, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron L, Puri, Raj K, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue Jane, Warrington, Janet A, Willey, James C, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell D, Tong, Weida
Published in BMC bioinformatics (12.08.2008)
Published in BMC bioinformatics (12.08.2008)
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Using RNA sample titrations to assess microarray platform performance and normalization techniques
Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Evaluation of external RNA controls for the assessment of microarray performance
Tong, Weida, Lucas, Anne Bergstrom, Shippy, Richard, Fan, Xiaohui, Fang, Hong, Hong, Huixiao, Orr, Michael S, Chu, Tzu-Ming, Guo, Xu, Collins, Patrick J, Sun, Yongming Andrew, Wang, Sue-Jane, Bao, Wenjun, Wolfinger, Russell D, Shchegrova, Svetlana, Guo, Lei, Warrington, Janet A, Shi, Leming
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale)
Mei, Nan, Guo, Lei, Zhang, Lu, Shi, Leming, Sun, Yongming Andrew, Fung, Chris, Moland, Carrie L, Dial, Stacey L, Fuscoe, James C, Chen, Tao
Published in BMC bioinformatics (26.09.2006)
Published in BMC bioinformatics (26.09.2006)
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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Shi, Leming, Reid, Laura H, Jones, Wendell D, Shippy, Richard, Warrington, Janet A, Baker, Shawn C, Collins, Patrick J, de Longueville, Francoise, Kawasaki, Ernest S, Lee, Kathleen Y, Luo, Yuling, Sun, Yongming Andrew, Willey, James C, Setterquist, Robert A, Fischer, Gavin M, Tong, Weida, Dragan, Yvonne P, Dix, David J, Frueh, Felix W, Goodsaid, Federico M, Herman, Damir, Jensen, Roderick V, Johnson, Charles D, Lobenhofer, Edward K, Puri, Raj K, Scherf, Uwe, Thierry-Mieg, Jean, Wang, Charles, Wilson, Mike, Wolber, Paul K, Zhang, Lu, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Lucas, Anne Bergstrom, Bertholet, Vincent, Boysen, Cecilie, Bromley, Bud, Brown, Donna, Brunner, Alan, Canales, Roger, Cao, Xiaoxi Megan, Cebula, Thomas A, Chen, James J, Cheng, Jing, Chu, Tzu-Ming, Chudin, Eugene, Corson, John, Corton, J Christopher, Croner, Lisa J, Davies, Christopher, Davison, Timothy S, Delenstarr, Glenda, Deng, Xutao, Dorris, David, Eklund, Aron C, Fan, Xiao-hui, Fang, Hong, Fulmer-Smentek, Stephanie, Fuscoe, James C, Gallagher, Kathryn, Ge, Weigong, Guo, Lei, Guo, Xu, Hager, Janet, Haje, Paul K, Han, Jing, Han, Tao, Harbottle, Heather C, Harris, Stephen C, Hatchwell, Eli, Hauser, Craig A, Hester, Susan, Hong, Huixiao, Hurban, Patrick, Jackson, Scott A, Ji, Hanlee, Knight, Charles R, Kuo, Winston P, LeClerc, J Eugene, Levy, Shawn, Li, Quan-Zhen, Liu, Chunmei, Liu, Ying, Lombardi, Michael J, Ma, Yunqing, Magnuson, Scott R, Maqsodi, Botoul, McDaniel, Tim, Mei, Nan, Myklebost, Ola, Ning, Baitang, Novoradovskaya, Natalia, Orr, Michael S, Osborn, Terry W, Papallo, Adam, Patterson, Tucker A, Perkins, Roger G, Peters, Elizabeth H, Peterson, Ron
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Rat toxicogenomic study reveals analytical consistency across microarray platforms
Guo, Lei, Lobenhofer, Edward K, Wang, Charles, Shippy, Richard, Harris, Stephen C, Zhang, Lu, Mei, Nan, Chen, Tao, Herman, Damir, Goodsaid, Federico M, Hurban, Patrick, Phillips, Kenneth L, Xu, Jun, Deng, Xutao, Sun, Yongming Andrew, Tong, Weida, Dragan, Yvonne P, Shi, Leming
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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The Reproducibility of Lists of Differentially Expressed Genes in Microarray Studies
Shi, Leming, Jones, Wendell, Jensen, Roderick, Harris, Stephen, Perkins, Roger, Goodsaid, Federico, Guo, Lei, Croner, Lisa, Boysen, Cecilie, Fang, Hong, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick, Fan, Xiao-hui, Frueh, Felix, Fuscoe, James, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron, Puri, Raj, Qian, Feng, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue-Jane, Warrington, Janet, Willey, James, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Chen, James, Wolfinger, Russell, Tong, Weida
Published in Nature precedings (02.07.2007)
Published in Nature precedings (02.07.2007)
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Real time PCR profiling of 330 human micro-RNAs
Lao, Kaiqin, Xu, Nan Lan, Sun, Yongming Andrew, Livak, Kenneth J, Straus, Neil A
Published in Biotechnology journal (01.01.2007)
Published in Biotechnology journal (01.01.2007)
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Rat toxicogenomic study reveals analytical consistency across microarray platforms : Microarray quality control consortium
LEI GUO, LOBENHOFER, Edward K, HURBAN, Patrick, PHILLIPS, Kenneth L, JUN XU, XUTAO DENG, SUN, Yongming Andrew, WEIDA TONG, DRAGAN, Yvonne P, LEMING SHI, WANG, Charles, SHIPPY, Richard, HARRIS, Stephen C, LU ZHANG, NAN MEI, TAO CHEN, HERMAN, Damir, GOODSAID, Federico M
Published in Nature biotechnology (2006)
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Published in Nature biotechnology (2006)
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Evaluation of external RNA controls for the assessment of microarray performance : Microarray quality control consortium
WEIDA TONG, BERGSTROM LUCAS, Anne, SUN, Yongming Andrew, WANG, Sue-Jane, WENJUN BAO, WOLFINGER, Russell D, SHCHEGROVA, Svetlana, LEI GUO, WARRINGTON, Janet A, LEMING SHI, SHIPPY, Richard, XIAOHUI FAN, HONG FANG, HUIXIAO HONG, ORR, Michael S, CHU, Tzu-Ming, XU GUO, COLLINS, Patrick J
Published in Nature biotechnology (2006)
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Published in Nature biotechnology (2006)
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Using RNA sample titrations to assess microarray platform performance and normalization techniques : Microarray quality control consortium
SHIPPY, Richard, FULMER-SMENTEK, Stephanie, SUN, Yongming Andrew, WILLEY, James C, THIERRY-MIEG, Jean, THIERRY-MIEG, Danielle, SETTERQUIST, Robert A, WILSON, Mike, BERGSTROM LUCAS, Anne, NOVORADOVSKAYA, Natalia, PAPALLO, Adam, TURPAZ, Yaron, JENSEN, Roderick V, BAKER, Shawn C, WARRINGTON, Janet A, LEMING SHI, HERMAN, Damir, JONES, Wendell D, WOLBER, Paul K, JOHNSON, Charles D, PINE, P. Scott, BOYSEN, Cecilie, XU GUO, CHUDIN, Eugene
Published in Nature biotechnology (2006)
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Published in Nature biotechnology (2006)
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The Reproducibility of Lists of Differentially Expressed Genes in Microarray Studies
Shi, Leming, Jones, Wendell, Jensen, Roderick, Harris, Stephen, Perkins, Roger, Goodsaid, Federico, Guo, Lei, Croner, Lisa, Boysen, Cecilie, Fang, Hong, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick, Fan, Xiao-hui, Frueh, Felix, Fuscoe, James, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron, Puri, Raj, Qian, Feng, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue-Jane, Warrington, Janet, Willey, James, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell, Tong, Weida
Published in Nature precedings (03.07.2007)
Published in Nature precedings (03.07.2007)
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