Lysogeny in nature: mechanisms, impact and ecology of temperate phages
Howard-Varona, Cristina, Hargreaves, Katherine R, Abedon, Stephen T, Sullivan, Matthew B
Published in The ISME Journal (01.07.2017)
Published in The ISME Journal (01.07.2017)
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Journal Article
VirSorter: mining viral signal from microbial genomic data
Roux, Simon, Enault, Francois, Hurwitz, Bonnie L, Sullivan, Matthew B
Published in PeerJ (San Francisco, CA) (28.05.2015)
Published in PeerJ (San Francisco, CA) (28.05.2015)
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Journal Article
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Bin Jang, Ho, Bolduc, Benjamin, Zablocki, Olivier, Kuhn, Jens H., Roux, Simon, Adriaenssens, Evelien M., Brister, J. Rodney, Kropinski, Andrew M, Krupovic, Mart, Lavigne, Rob, Turner, Dann, Sullivan, Matthew B.
Published in Nature biotechnology (01.06.2019)
Published in Nature biotechnology (01.06.2019)
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Journal Article
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A, Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O, Pratama, Akbar Adjie, Gazitúa, M Consuelo, Vik, Dean, Sullivan, Matthew B, Roux, Simon
Published in Microbiome (01.02.2021)
Published in Microbiome (01.02.2021)
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Journal Article
DRAM for distilling microbial metabolism to automate the curation of microbiome function
Shaffer, Michael, Borton, Mikayla A, McGivern, Bridget B, Zayed, Ahmed A, La Rosa, Sabina Leanti, Solden, Lindsey M, Liu, Pengfei, Narrowe, Adrienne B, Rodríguez-Ramos, Josué, Bolduc, Benjamin, Gazitúa, M Consuelo, Daly, Rebecca A, Smith, Garrett J, Vik, Dean R, Pope, Phil B, Sullivan, Matthew B, Roux, Simon, Wrighton, Kelly C
Published in Nucleic acids research (18.09.2020)
Published in Nucleic acids research (18.09.2020)
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Journal Article
Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics
Brum, Jennifer R, Hurwitz, Bonnie L, Schofield, Oscar, Ducklow, Hugh W, Sullivan, Matthew B
Published in The ISME Journal (01.02.2016)
Published in The ISME Journal (01.02.2016)
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Journal Article
Revisiting the rules of life for viruses of microorganisms
Correa, Adrienne M. S., Howard-Varona, Cristina, Coy, Samantha R., Buchan, Alison, Sullivan, Matthew B., Weitz, Joshua S.
Published in Nature reviews. Microbiology (01.08.2021)
Published in Nature reviews. Microbiology (01.08.2021)
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Journal Article
Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages
Kieft, Kristopher, Zhou, Zhichao, Anderson, Rika E., Buchan, Alison, Campbell, Barbara J., Hallam, Steven J., Hess, Matthias, Sullivan, Matthew B., Walsh, David A., Roux, Simon, Anantharaman, Karthik
Published in Nature communications (09.06.2021)
Published in Nature communications (09.06.2021)
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Journal Article
Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Journal Article
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Roux, Simon, Brum, Jennifer R., Dutilh, Bas E., Sunagawa, Shinichi, Duhaime, Melissa B., Loy, Alexander, Poulos, Bonnie T., Solonenko, Natalie, Lara, Elena, Poulain, Julie, Pesant, Stéphane, Kandels-Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Searson, Sarah, Cruaud, Corinne, Alberti, Adriana, Duarte, Carlos M., Gasol, Josep M., Vaqué, Dolors, Bork, Peer, Acinas, Silvia G., Wincker, Patrick, Sullivan, Matthew B.
Published in Nature (London) (29.09.2016)
Published in Nature (London) (29.09.2016)
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Journal Article
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Kang, Dae-Wook, Adams, James B, Gregory, Ann C, Borody, Thomas, Chittick, Lauren, Fasano, Alessio, Khoruts, Alexander, Geis, Elizabeth, Maldonado, Juan, McDonough-Means, Sharon, Pollard, Elena L, Roux, Simon, Sadowsky, Michael J, Lipson, Karen Schwarzberg, Sullivan, Matthew B, Caporaso, J Gregory, Krajmalnik-Brown, Rosa
Published in Microbiome (23.01.2017)
Published in Microbiome (23.01.2017)
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