Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection
Garcia-Ruiz, Hernan, Takeda, Atsushi, Chapman, Elisabeth J, Sullivan, Christopher M, Fahlgren, Noah, Brempelis, Katherine J, Carrington, James C
Published in The Plant cell (01.02.2010)
Published in The Plant cell (01.02.2010)
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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
Fahlgren, Noah, Howell, Miya D, Kasschau, Kristin D, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Law, Theresa F, Grant, Sarah R, Dangl, Jeffery L, Carrington, James C
Published in PloS one (14.02.2007)
Published in PloS one (14.02.2007)
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Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
Carrington, James C, Fahlgren, Noah, Cuperus, Josh T, Carbonell, Alberto, Garcia-Ruiz, Hernan, Gilbert, Sunny D, Burke, Russell T, Montgomery, Taiowa A, Takeda, Atsushi, Sullivan, Christopher M
Published in Nature structural & molecular biology (01.08.2010)
Published in Nature structural & molecular biology (01.08.2010)
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Journal Article
MicroRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana
Fahlgren, Noah, Jogdeo, Sanjuro, Kasschau, Kristin D, Sullivan, Christopher M, Chapman, Elisabeth J, Laubinger, Sascha, Smith, Lisa M, Dasenko, Mark, Givan, Scott A, Weigel, Detlef, Carrington, James C
Published in The Plant cell (01.04.2010)
Published in The Plant cell (01.04.2010)
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Genome-wide profiling and analysis of Arabidopsis siRNAs
Kasschau, Kristin D, Fahlgren, Noah, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Carrington, James C
Published in PLoS biology (01.03.2007)
Published in PLoS biology (01.03.2007)
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Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules
Michael, Todd P, Mockler, Todd C, Breton, Ghislain, McEntee, Connor, Byer, Amanda, Trout, Jonathan D, Hazen, Samuel P, Shen, Rongkun, Priest, Henry D, Sullivan, Christopher M, Givan, Scott A, Yanovsky, Marcelo, Hong, Fangxin, Kay, Steve A, Chory, Joanne
Published in PLoS genetics (01.02.2008)
Published in PLoS genetics (01.02.2008)
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Automated identification of avian vocalizations with deep convolutional neural networks
Ruff, Zachary J., Lesmeister, Damon B., Duchac, Leila S., Padmaraju, Bharath K., Sullivan, Christopher M., Pettorelli, Nathalie, Lecours, Vincent
Published in Remote sensing in ecology and conservation (01.03.2020)
Published in Remote sensing in ecology and conservation (01.03.2020)
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Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
Cuperus, Josh T, Montgomery, Taiowa A, Fahlgren, Noah, Burke, Russell T, Townsend, Tiffany, Sullivan, Christopher M, Carrington, James C
Published in Proceedings of the National Academy of Sciences - PNAS (05.01.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (05.01.2010)
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Transcription Factors in Light and Circadian Clock Signaling Networks Revealed by Genomewide Mapping of Direct Targets for Neurospora White Collar Complex
Smith, Kristina M, Sancar, Gencer, Dekhang, Rigzin, Sullivan, Christopher M, Li, Shaojie, Tag, Andrew G, Sancar, Cigdem, Bredeweg, Erin L, Priest, Henry D, McCormick, Ryan F, Thomas, Terry L, Carrington, James C, Stajich, Jason E, Bell-Pedersen, Deborah, Brunner, Michael, Freitag, Michael
Published in Eukaryotic Cell (01.10.2010)
Published in Eukaryotic Cell (01.10.2010)
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Journal Article
AGO1-miR173 complex initiates phased siRNA formation in plants
Montgomery, Taiowa A, Yoo, Seong Jeon, Fahlgren, Noah, Gilbert, Sunny D, Howell, Miya D, Sullivan, Christopher M, Alexander, Amanda, Nguyen, Goretti, Allen, Edwards, Ahn, Ji Hoon, Carrington, James C
Published in Proceedings of the National Academy of Sciences - PNAS (23.12.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (23.12.2008)
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mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
Zhang, Chi, Montgomery, Taiowa A., Gabel, Harrison W., Fischer, Sylvia E. J., Phillips, Carolyn M., Fahlgren, Noah, Sullivan, Christopher M., Carrington, James C., Ruvkun, Gary
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2011)
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The Caenorhabditis elegans RDE-10/RDE-11 Complex Regulates RNAi by Promoting Secondary siRNA Amplification
Zhang, Chi, Montgomery, Taiowa A., Fischer, Sylvia E.J., Garcia, Susana M.D.A., Riedel, Christian G., Fahlgren, Noah, Sullivan, Christopher M., Carrington, James C., Ruvkun, Gary
Published in Current biology (22.05.2012)
Published in Current biology (22.05.2012)
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Enterococcus faecalis Polymicrobial Interactions Facilitate Biofilm Formation, Antibiotic Recalcitrance, and Persistent Colonization of the Catheterized Urinary Tract
Gaston, Jordan R, Andersen, Marissa J, Johnson, Alexandra O, Bair, Kirsten L, Sullivan, Christopher M, Guterman, L Beryl, White, Ashely N, Brauer, Aimee L, Learman, Brian S, Flores-Mireles, Ana L, Armbruster, Chelsie E
Published in Pathogens (Basel) (13.10.2020)
Published in Pathogens (Basel) (13.10.2020)
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Journal Article
Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs
Fahlgren, Noah, Bollmann, Stephanie R, Kasschau, Kristin D, Cuperus, Josh T, Press, Caroline M, Sullivan, Christopher M, Chapman, Elisabeth J, Hoyer, J. Steen, Gilbert, Kerrigan B, Grünwald, Niklaus J, Carrington, James C, Margis, Rogerio
Published in PloS one (21.10.2013)
Published in PloS one (21.10.2013)
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Journal Article
The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications
Fischer, Sylvia E J, Montgomery, Taiowa A, Zhang, Chi, Fahlgren, Noah, Breen, Peter C, Hwang, Alexia, Sullivan, Christopher M, Carrington, James C, Ruvkun, Gary
Published in PLoS genetics (01.11.2011)
Published in PLoS genetics (01.11.2011)
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Journal Article
Computational and analytical framework for small RNA profiling by high-throughput sequencing
Fahlgren, Noah, Sullivan, Christopher M, Kasschau, Kristin D, Chapman, Elisabeth J, Cumbie, Jason S, Montgomery, Taiowa A, Gilbert, Sunny D, Dasenko, Mark, Backman, Tyler W H, Givan, Scott A, Carrington, James C
Published in RNA (Cambridge) (01.05.2009)
Published in RNA (Cambridge) (01.05.2009)
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Content-Aware Segmentation of Objects Spanning a Large Size Range: Application to Plankton Images
Panaïotis, Thelma, Caray–Counil, Louis, Woodward, Ben, Schmid, Moritz S., Daprano, Dominic, Tsai, Sheng Tse, Sullivan, Christopher M., Cowen, Robert K., Irisson, Jean-Olivier
Published in Frontiers in Marine Science (06.06.2022)
Published in Frontiers in Marine Science (06.06.2022)
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