Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms
Raczy, Come, Petrovski, Roman, Saunders, Christopher T, Chorny, Ilya, Kruglyak, Semyon, Margulies, Elliott H, Chuang, Han-Yu, Källberg, Morten, Kumar, Swathi A, Liao, Arnold, Little, Kristina M, Strömberg, Michael P, Tanner, Stephen W
Published in Bioinformatics (15.08.2013)
Published in Bioinformatics (15.08.2013)
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BamTools: a C++ API and toolkit for analyzing and managing BAM files
BARNETT, Derek W, GARRISON, Erik K, QUINLAN, Aaron R, STRÖMBERG, Michael P, MARTH, Gabor T
Published in Bioinformatics (Oxford, England) (15.06.2011)
Published in Bioinformatics (Oxford, England) (15.06.2011)
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A comprehensive map of mobile element insertion polymorphisms in humans
Stewart, Chip, Kural, Deniz, Strömberg, Michael P, Walker, Jerilyn A, Konkel, Miriam K, Stütz, Adrian M, Urban, Alexander E, Grubert, Fabian, Lam, Hugo Y K, Lee, Wan-Ping, Busby, Michele, Indap, Amit R, Garrison, Erik, Huff, Chad, Xing, Jinchuan, Snyder, Michael P, Jorde, Lynn B, Batzer, Mark A, Korbel, Jan O, Marth, Gabor T
Published in PLoS genetics (01.08.2011)
Published in PLoS genetics (01.08.2011)
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MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping
Lee, Wan-Ping, Stromberg, Michael P, Ward, Alistair, Stewart, Chip, Garrison, Erik P, Marth, Gabor T
Published in PloS one (05.03.2014)
Published in PloS one (05.03.2014)
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Pyrobayes: an improved base caller for SNP discovery in pyrosequences
Marth, Gábor T, Quinlan, Aaron R, Stewart, Donald A, Strömberg, Michael P
Published in Nature methods (01.02.2008)
Published in Nature methods (01.02.2008)
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Rapid whole-genome mutational profiling using next-generation sequencing technologies
Smith, Douglas R, Quinlan, Aaron R, Peckham, Heather E, Makowsky, Kathryn, Tao, Wei, Woolf, Betty, Shen, Lei, Donahue, William F, Tusneem, Nadeem, Stromberg, Michael P, Stewart, Donald A, Zhang, Lu, Ranade, Swati S, Warner, Jason B, Lee, Clarence C, Coleman, Brittney E, Zhang, Zheng, McLaughlin, Stephen F, Malek, Joel A, Sorenson, Jon M, Blanchard, Alan P, Chapman, Jarrod, Hillman, David, Chen, Feng, Rokhsar, Daniel S, McKernan, Kevin J, Jeffries, Thomas W, Marth, Gabor T, Richardson, Paul M
Published in Genome Research (01.10.2008)
Published in Genome Research (01.10.2008)
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Expression divergence measured by transcriptome sequencing of four yeast species
Busby, Michele A, Gray, Jesse M, Costa, Allen M, Stewart, Chip, Stromberg, Michael P, Barnett, Derek, Chuang, Jeffrey H, Springer, Michael, Marth, Gabor T
Published in BMC genomics (29.12.2011)
Published in BMC genomics (29.12.2011)
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Mapping copy number variation by population-scale genome sequencing
Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kural, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gabor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.
Published in Nature (London) (03.02.2011)
Published in Nature (London) (03.02.2011)
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A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans: e1002236
Stewart, Chip, Kural, Deniz, Strömberg, Michael P, Walker, Jerilyn A, Konkel, Miriam K, Stütz, Adrian M, Urban, Alexander E, Grubert, Fabian, Lam, Hugo YK, Lee, Wan-Ping, Busby, Michele, Indap, Amit R, Garrison, Erik, Huff, Chad, Xing, Jinchuan, Snyder, Michael P, Jorde, Lynn B, Batzer, Mark A, Korbel, Jan O, Marth, Gabor T, Project, 1000 Genomes
Published in PLoS genetics (01.08.2011)
Published in PLoS genetics (01.08.2011)
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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping: e90581
Lee, Wan-Ping, Stromberg, Michael P, Ward, Alistair, Stewart, Chip, Garrison, Erik P, Marth, Gabor T
Published in PloS one (01.03.2014)
Published in PloS one (01.03.2014)
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