by Singharoy, Abhishek, Teo, Ivan, McGreevy, Ryan, Stone, John E, Zhao, Jianhua, Schulten, Klaus
Published in eLife (07.07.2016)

by Ribeiro, João V., Bernardi, Rafael C., Rudack, Till, Stone, John E., Phillips, James C., Freddolino, Peter L., Schulten, Klaus
Published in Scientific reports (24.05.2016)

by Roberts, Elijah, Stone, John E., Luthey-Schulten, Zaida
Published in Journal of computational chemistry (30.01.2013)

by Vermaas, Josh V, Hardy, David J, Stone, John E, Tajkhorshid, Emad, Kohlmeyer, Axel
Published in Journal of chemical information and modeling (27.06.2016)

by Stone, John E., Hardy, David J., Ufimtsev, Ivan S., Schulten, Klaus
Published in Journal of molecular graphics & modelling (01.09.2010)

by Casalino, Lorenzo, Dommer, Abigail C, Gaieb, Zied, Barros, Emilia P, Sztain, Terra, Ahn, Surl-Hee, Trifan, Anda, Brace, Alexander, Bogetti, Anthony T, Clyde, Austin, Ma, Heng, Lee, Hyungro, Turilli, Matteo, Khalid, Syma, Chong, Lillian T, Simmerling, Carlos, Hardy, David J, Maia, Julio DC, Phillips, James C, Kurth, Thorsten, Stern, Abraham C, Huang, Lei, McCalpin, John D, Tatineni, Mahidhar, Gibbs, Tom, Stone, John E, Jha, Shantenu, Ramanathan, Arvind, Amaro, Rommie E
Published in The international journal of high performance computing applications (01.09.2021)

by Gamini, Ramya, Han, Wei, Stone, John E, Schulten, Klaus
Published in PLoS computational biology (01.03.2014)

by Stone, John E, McGreevy, Ryan, Isralewitz, Barry, Schulten, Klaus
Published in Faraday discussions (01.01.2014)

by Cai, En, Ge, Pinghua, Lee, Sang Hak, Jeyifous, Okunola, Wang, Yong, Liu, Yanxin, Wilson, Katie M., Lim, Sung Jun, Baird, Michelle A., Stone, John E., Lee, Kwan Young, Davidson, Michael W., Chung, Hee Jung, Schulten, Klaus, Smith, Andrew M., Green, William N., Selvin, Paul R.
Published in Angewandte Chemie International Edition (10.11.2014)

by Hsin, Jen, Arkhipov, Anton, Yin, Ying, Stone, John E, Schulten, Klaus
Published in Current protocols in bioinformatics (01.12.2008)

by Stone, John E., Gohara, David, Shi, Guochun
Published in Computing in science & engineering (01.05.2010)

by Hallock, Michael J., Stone, John E., Roberts, Elijah, Fry, Corey, Luthey-Schulten, Zaida
Published in Parallel computing (01.05.2014)

by Gilbert, Benjamin R, Thornburg, Zane R, Brier, Troy A, Stevens, Jan A, Grünewald, Fabian, Stone, John E, Marrink, Siewert J, Luthey-Schulten, Zaida
Published in Frontiers in cell and developmental biology (09.08.2023)

by Levine, Benjamin G., Stone, John E., Kohlmeyer, Axel
Published in Journal of computational physics (01.05.2011)

by Phillips, James C, Hardy, David J, Maia, Julio D C, Stone, John E, Ribeiro, João V, Bernardi, Rafael C, Buch, Ronak, Fiorin, Giacomo, Hénin, Jérôme, Jiang, Wei, McGreevy, Ryan, Melo, Marcelo C R, Radak, Brian K, Skeel, Robert D, Singharoy, Abhishek, Wang, Yi, Roux, Benoît, Aksimentiev, Aleksei, Luthey-Schulten, Zaida, Kalé, Laxmikant V, Schulten, Klaus, Chipot, Christophe, Tajkhorshid, Emad
Published in The Journal of chemical physics (28.07.2020)

by Barhaghi, Mohammad Soroush, Crawford, Brad, Schwing, Gregory, Hardy, David J., Stone, John E., Schwiebert, Loren, Potoff, Jeffrey, Tajkhorshid, Emad
Published in Journal of chemical theory and computation (09.08.2022)

by Spivak, Mariano, Stone, John E., Ribeiro, João, Saam, Jan, Freddolino, Peter L., Bernardi, Rafael C., Tajkhorshid, Emad
Published in Journal of chemical information and modeling (14.08.2023)

by Singharoy, Abhishek, Maffeo, Christopher, Delgado-Magnero, Karelia H., Swainsbury, David J.K., Sener, Melih, Kleinekathöfer, Ulrich, Vant, John W., Nguyen, Jonathan, Hitchcock, Andrew, Isralewitz, Barry, Teo, Ivan, Chandler, Danielle E., Stone, John E., Phillips, James C., Pogorelov, Taras V., Mallus, M. Ilaria, Chipot, Christophe, Luthey-Schulten, Zaida, Tieleman, D. Peter, Hunter, C. Neil, Tajkhorshid, Emad, Aksimentiev, Aleksei, Schulten, Klaus
Published in Cell (14.11.2019)

by Stone, John E, Phillips, James C, Freddolino, Peter L, Hardy, David J, Trabuco, Leonardo G, Schulten, Klaus
Published in Journal of computational chemistry (01.12.2007)

by Navratil, Paul, Gribble, Christiaan, Grosset, Pascal, Stone, John E.
Published in Computing in science & engineering (01.03.2022)