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Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl
Busslinger, Georg A., Stocsits, Roman R., van der Lelij, Petra, Axelsson, Elin, Tedeschi, Antonio, Galjart, Niels, Peters, Jan-Michael
Published in Nature (London) (27.04.2017)
Published in Nature (London) (27.04.2017)
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Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
Wutz, Gordana, Várnai, Csilla, Nagasaka, Kota, Cisneros, David A, Stocsits, Roman R, Tang, Wen, Schoenfelder, Stefan, Jessberger, Gregor, Muhar, Matthias, Hossain, M Julius, Walther, Nike, Koch, Birgit, Kueblbeck, Moritz, Ellenberg, Jan, Zuber, Johannes, Fraser, Peter, Peters, Jan‐Michael
Published in The EMBO journal (15.12.2017)
Published in The EMBO journal (15.12.2017)
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ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL
Wutz, Gordana, Ladurner, Rene, St Hilaire, Brian Glenn, Stocsits, Roman R, Nagasaka, Kota, Pignard, Benoit, Sanborn, Adrian, Tang, Wen, Várnai, Csilla, Ivanov, Miroslav P, Schoenfelder, Stefan, van der Lelij, Petra, Huang, Xingfan, Dürnberger, Gerhard, Roitinger, Elisabeth, Mechtler, Karl, Davidson, Iain Finley, Fraser, Peter, Lieberman-Aiden, Erez, Peters, Jan-Michael
Published in eLife (17.02.2020)
Published in eLife (17.02.2020)
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HiCognition: a visual exploration and hypothesis testing tool for 3D genomics
Langer, Christoph C. H., Mitter, Michael, Stocsits, Roman R., Gerlich, Daniel W.
Published in Genome Biology (05.07.2023)
Published in Genome Biology (05.07.2023)
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Absolute quantification of cohesin, CTCF and their regulators in human cells
Holzmann, Johann, Politi, Antonio Z, Nagasaka, Kota, Hantsche-Grininger, Merle, Walther, Nike, Koch, Birgit, Fuchs, Johannes, Dürnberger, Gerhard, Tang, Wen, Ladurner, Rene, Stocsits, Roman R, Busslinger, Georg A, Novák, Béla, Mechtler, Karl, Davidson, Iain Finley, Ellenberg, Jan, Peters, Jan-Michael
Published in eLife (17.06.2019)
Published in eLife (17.06.2019)
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H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress
Sawicka, Anna, Hartl, Dominik, Goiser, Malgorzata, Pusch, Oliver, Stocsits, Roman R., Tamir, Ido M., Mechtler, Karl, Seiser, Christian
Published in Genome research (01.11.2014)
Published in Genome research (01.11.2014)
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SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs
van der Lelij, Petra, Stocsits, Roman R, Ladurner, Rene, Petzold, Georg, Kreidl, Emanuel, Koch, Birgit, Schmitz, Julia, Neumann, Beate, Ellenberg, Jan, Peters, Jan-Michael
Published in The EMBO journal (18.11.2014)
Published in The EMBO journal (18.11.2014)
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The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods
Letsch, Harald O., Kück, Patrick, Stocsits, Roman R., Misof, Bernhard
Published in Molecular biology and evolution (01.11.2010)
Published in Molecular biology and evolution (01.11.2010)
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Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships
von Reumont, Björn M, Meusemann, Karen, Szucsich, Nikolaus U, Dell'Ampio, Emiliano, Gowri-Shankar, Vivek, Bartel, Daniela, Simon, Sabrina, Letsch, Harald O, Stocsits, Roman R, Luan, Yun-xia, Wägele, Johann, Pass, Günther, Hadrys, Heike, Misof, Bernhard
Published in BMC evolutionary biology (27.05.2009)
Published in BMC evolutionary biology (27.05.2009)
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Transcription shapes 3D chromatin organization by interacting with loop extrusion
Banigan, Edward J., Tang, Wen, van den Berg, Aafke A., Stocsits, Roman R., Wutz, Gordana, Brandão, Hugo B., Busslinger, Georg A., Peters, Jan-Michael, Mirny, Leonid A.
Published in Proceedings of the National Academy of Sciences - PNAS (14.03.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (14.03.2023)
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Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms
Nagasaka, Kota, Davidson, Iain F., Stocsits, Roman R., Tang, Wen, Wutz, Gordana, Batty, Paul, Panarotto, Melanie, Litos, Gabriele, Schleiffer, Alexander, Gerlich, Daniel W., Peters, Jan-Michael
Published in Molecular cell (07.09.2023)
Published in Molecular cell (07.09.2023)
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Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei
Jessberger, Gregor, Várnai, Csilla, Stocsits, Roman R., Tang, Wen, Stary, Georg, Peters, Jan-Michael
Published in Genome research (01.12.2023)
Published in Genome research (01.12.2023)
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Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing
Latos, Paulina A., Pauler, Florian M., Koerner, Martha V., Şenergin, H. Başak, Hudson, Quanah J., Stocsits, Roman R., Allhoff, Wolfgang, Stricker, Stefan H., Klement, Ruth M., Warczok, Katarzyna E., Aumayr, Karin, Pasierbek, Pawel, Barlow, Denise P.
Published in Science (American Association for the Advancement of Science) (14.12.2012)
Published in Science (American Association for the Advancement of Science) (14.12.2012)
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Cohesin supercoils DNA during loop extrusion
Davidson, Iain F., Barth, Roman, Nagasaka, Kota, Tang, Wen, Wutz, Gordana, Horn, Sabrina, Janissen, Richard, Stocsits, Roman R., Chlosta, Emilia, Bauer, Benedikt W., Dekker, Cees, Peters, Jan-Michael
Published in Cell reports (Cambridge) (24.06.2025)
Published in Cell reports (Cambridge) (24.06.2025)
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Accurate and efficient reconstruction of deep phylogenies from structured RNAs
Stocsits, Roman R, Letsch, Harald, Hertel, Jana, Misof, Bernhard, Stadler, Peter F
Published in Nucleic acids research (01.10.2009)
Published in Nucleic acids research (01.10.2009)
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Multiple sequence alignments of partially coding nucleic acid sequences
Stocsits, Roman R, Hofacker, Ivo L, Fried, Claudia, Stadler, Peter F
Published in BMC bioinformatics (28.06.2005)
Published in BMC bioinformatics (28.06.2005)
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Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation
Letsch, Harald O., Greve, Carola, Kück, Patrick, Fleck, Günther, Stocsits, Roman R., Misof, Bernhard
Published in Molecular phylogenetics and evolution (01.12.2009)
Published in Molecular phylogenetics and evolution (01.12.2009)
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Absolute quantification of Cohesin, CTCF and their regulators in human cells
Holzmann, Johann, Politi, Antonio Z., Nagasaka, Kota, Hantsche-Grininger, Merle, Walther, Nike, Koch, Birgit, Fuchs, Johannes, Dürnberger, Gerhard, Tang, Wen, Ladurner, Rene, Stocsits, Roman R., Busslinger, Georg A., Novák, Béla, Mechtler, Karl, Davidson, Iain Finley, Ellenberg, Jan, Peters, Jan Michael
Published in eLife (01.06.2019)
Published in eLife (01.06.2019)
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RNAP as a Moving Barrier to Loop Extrusion
van den Berg, Aafke A., Wutz, Gordana, Stocsits, Roman R., Brandao, Hugo, Busslinger, Georg, Peters, Jan-Michael, Mirny, Leonid
Published in Biophysical journal (15.02.2019)
Published in Biophysical journal (15.02.2019)
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