Search Results - "Steven L. Salzberg" :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

Next-generation genome annotation: we still struggle to get it right

Next-generation genome annotation: we still struggle to get it right

by Salzberg, Steven L
Published in Genome Biology (16.05.2019)

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Liftoff: accurate mapping of gene annotations

Liftoff: accurate mapping of gene annotations

by Shumate, Alaina, Salzberg, Steven L
Published in Bioinformatics (19.07.2021)

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Open questions: How many genes do we have?

Open questions: How many genes do we have?

by Salzberg, Steven L
Published in BMC biology (20.08.2018)

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Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

by Steinegger, Martin, Salzberg, Steven L
Published in Genome Biology (12.05.2020)

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FLASH: fast length adjustment of short reads to improve genome assemblies

FLASH: fast length adjustment of short reads to improve genome assemblies

by Mago, Tanja, Salzberg, Steven L.
Published in Bioinformatics (01.11.2011)

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Centrifuge: rapid and sensitive classification of metagenomic sequences

Centrifuge: rapid and sensitive classification of metagenomic sequences

by Kim, Daehwan, Song, Li, Breitwieser, Florian P, Salzberg, Steven L
Published in Genome research (01.12.2016)

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

by Kim, Daehwan, Salzberg, Steven L
Published in Genome biology (11.08.2011)

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Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

by Kovaka, Sam, Zimin, Aleksey V, Pertea, Geo M, Razaghi, Roham, Salzberg, Steven L, Pertea, Mihaela
Published in Genome Biology (16.12.2019)

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The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

by Zimin, Aleksey V, Salzberg, Steven L, Ouzounis, Christos A, Noble, William Stafford
Published in PLoS computational biology (26.06.2020)

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Journal Article

Repetitive DNA and next-generation sequencing: computational challenges and solutions

Repetitive DNA and next-generation sequencing: computational challenges and solutions

by Treangen, Todd J., Salzberg, Steven L.
Published in Nature reviews. Genetics (01.01.2012)

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A review of methods and databases for metagenomic classification and assembly

A review of methods and databases for metagenomic classification and assembly

by Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
Published in Briefings in bioinformatics (19.07.2019)

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Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2

Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2

by Lu, Jennifer, Salzberg, Steven L
Published in Microbiome (28.08.2020)

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Next-generation sequencing: insights to advance clinical investigations of the microbiome

Next-generation sequencing: insights to advance clinical investigations of the microbiome

by Wensel, Caroline R, Pluznick, Jennifer L, Salzberg, Steven L, Sears, Cynthia L
Published in The Journal of clinical investigation (01.04.2022)

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Horizontal gene transfer is not a hallmark of the human genome

Horizontal gene transfer is not a hallmark of the human genome

by Salzberg, Steven L
Published in Genome Biology (08.05.2017)

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Bracken: estimating species abundance in metagenomics data

Bracken: estimating species abundance in metagenomics data

by Lu, Jennifer, Breitwieser, Florian P, Thielen, Peter, Salzberg, Steven L
Published in PeerJ. Computer science (02.01.2017)

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Removing contaminants from databases of draft genomes

Removing contaminants from databases of draft genomes

by Lu, Jennifer, Salzberg, Steven L
Published in PLoS computational biology (01.06.2018)

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MUMmer4: A fast and versatile genome alignment system

MUMmer4: A fast and versatile genome alignment system

by Marçais, Guillaume, Delcher, Arthur L, Phillippy, Adam M, Coston, Rachel, Salzberg, Steven L, Zimin, Aleksey
Published in PLoS computational biology (01.01.2018)

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SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes

SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes

by Lu, Jennifer, Salzberg, Steven L
Published in PLoS computational biology (01.12.2020)

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The MaSuRCA genome assembler

The MaSuRCA genome assembler

by Zimin, Aleksey V, Marçais, Guillaume, Puiu, Daniela, Roberts, Michael, Salzberg, Steven L, Yorke, James A
Published in Bioinformatics (01.11.2013)

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

by Langmead, Ben, Trapnell, Cole, Pop, Mihai, Salzberg, Steven L
Published in Genome biology (04.03.2009)

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