Spatially confined sub-tumor microenvironments in pancreatic cancer
Grünwald, Barbara T., Devisme, Antoine, Andrieux, Geoffroy, Vyas, Foram, Aliar, Kazeera, McCloskey, Curtis W., Macklin, Andrew, Jang, Gun Ho, Denroche, Robert, Romero, Joan Miguel, Bavi, Prashant, Bronsert, Peter, Notta, Faiyaz, O’Kane, Grainne, Wilson, Julie, Knox, Jennifer, Tamblyn, Laura, Udaskin, Molly, Radulovich, Nikolina, Fischer, Sandra E., Boerries, Melanie, Gallinger, Steven, Kislinger, Thomas, Khokha, Rama
Published in Cell (28.10.2021)
Published in Cell (28.10.2021)
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Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution
Chan-Seng-Yue, Michelle, Kim, Jaeseung C., Wilson, Gavin W., Ng, Karen, Figueroa, Eugenia Flores, O’Kane, Grainne M., Connor, Ashton A., Denroche, Robert E., Grant, Robert C., McLeod, Jessica, Wilson, Julie M., Jang, Gun Ho, Zhang, Amy, Dodd, Anna, Liang, Sheng-Ben, Borgida, Ayelet, Chadwick, Dianne, Kalimuthu, Sangeetha, Lungu, Ilinca, Bartlett, John M. S., Krzyzanowski, Paul M., Sandhu, Vandana, Tiriac, Hervé, Froeling, Fieke E. M., Karasinska, Joanna M., Topham, James T., Renouf, Daniel J., Schaeffer, David F., Jones, Steven J. M., Marra, Marco A., Laskin, Janessa, Chetty, Runjan, Stein, Lincoln D., Zogopoulos, George, Haibe-Kains, Benjamin, Campbell, Peter J., Tuveson, David A., Knox, Jennifer J., Fischer, Sandra E., Gallinger, Steven, Notta, Faiyaz
Published in Nature genetics (01.02.2020)
Published in Nature genetics (01.02.2020)
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Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
Chen, Yi-an, Lemire, Mathieu, Choufani, Sanaa, Butcher, Darci T., Grafodatskaya, Daria, Zanke, Brent W., Gallinger, Steven, Hudson, Thomas J., Weksberg, Rosanna
Published in Epigenetics (01.02.2013)
Published in Epigenetics (01.02.2013)
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GATA6 Expression Distinguishes Classical and Basal-like Subtypes in Advanced Pancreatic Cancer
O'Kane, Grainne M, Grünwald, Barbara T, Jang, Gun-Ho, Masoomian, Mehdi, Picardo, Sarah, Grant, Robert C, Denroche, Robert E, Zhang, Amy, Wang, Yifan, Lam, Bernard, Krzyzanowski, Paul M, Lungu, Illinca M, Bartlett, John M S, Peralta, Melanie, Vyas, Foram, Khokha, Rama, Biagi, James, Chadwick, Dianne, Ramotar, Stephanie, Hutchinson, Shawn, Dodd, Anna, Wilson, Julie M, Notta, Faiyaz, Zogopoulos, George, Gallinger, Steven, Knox, Jennifer J, Fischer, Sandra E
Published in Clinical cancer research (15.09.2020)
Published in Clinical cancer research (15.09.2020)
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Ductal pancreatic cancer modeling and drug screening using human pluripotent stem cell– and patient-derived tumor organoids
Huang, Ling, Holtzinger, Audrey, Jagan, Ishaan, BeGora, Michael, Lohse, Ines, Ngai, Nicholas, Nostro, Cristina, Wang, Rennian, Muthuswamy, Lakshmi B, Crawford, Howard C, Arrowsmith, Cheryl, Kalloger, Steve E, Renouf, Daniel J, Connor, Ashton A, Cleary, Sean, Schaeffer, David F, Roehrl, Michael, Tsao, Ming-Sound, Gallinger, Steven, Keller, Gordon, Muthuswamy, Senthil K
Published in Nature medicine (01.11.2015)
Published in Nature medicine (01.11.2015)
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Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database
Dominguez-Valentin, Mev, Sampson, Julian R., Seppälä, Toni T., ten Broeke, Sanne W., Plazzer, John-Paul, Nakken, Sigve, Engel, Christoph, Aretz, Stefan, Jenkins, Mark A., Sunde, Lone, Bernstein, Inge, Capella, Gabriel, Balaguer, Francesc, Thomas, Huw, Evans, D. Gareth, Burn, John, Greenblatt, Marc, Hovig, Eivind, de Vos tot Nederveen Cappel, Wouter H., Sijmons, Rolf H., Bertario, Lucio, Tibiletti, Maria Grazia, Cavestro, Giulia Martina, Lindblom, Annika, Della Valle, Adriana, Lopez-Köstner, Francisco, Gluck, Nathan, Katz, Lior H., Heinimann, Karl, Vaccaro, Carlos A., Büttner, Reinhard, Görgens, Heike, Holinski-Feder, Elke, Morak, Monika, Holzapfel, Stefanie, Hüneburg, Robert, Knebel Doeberitz, Magnus von, Loeffler, Markus, Rahner, Nils, Schackert, Hans K., Steinke-Lange, Verena, Schmiegel, Wolff, Vangala, Deepak, Pylvänäinen, Kirsi, Renkonen-Sinisalo, Laura, Hopper, John L., Win, Aung Ko, Haile, Robert W., Lindor, Noralane M., Gallinger, Steven, Le Marchand, Loïc, Newcomb, Polly A., Figueiredo, Jane C., Thibodeau, Stephen N., Wadt, Karin, Therkildsen, Christina, Okkels, Henrik, Ketabi, Zohreh, Moreira, Leticia, Sánchez, Ariadna, Serra-Burriel, Miquel, Pineda, Marta, Navarro, Matilde, Blanco, Ignacio, Green, Kate, Lalloo, Fiona, Crosbie, Emma J., Hill, James, Denton, Oliver G., Frayling, Ian M., Rødland, Einar Andreas, Vasen, Hans, Mints, Miriam, Neffa, Florencia, Esperon, Patricia, Alvarez, Karin, Kariv, Revital, Rosner, Guy, Pinero, Tamara Alejandra, Gonzalez, María Laura, Kalfayan, Pablo, Tjandra, Douglas, Winship, Ingrid M., Macrae, Finlay, Möslein, Gabriela, Mecklin, Jukka-Pekka, Nielsen, Maartje, Møller, Pål
Published in Genetics in medicine (01.01.2020)
Published in Genetics in medicine (01.01.2020)
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Variable Clonal Repopulation Dynamics Influence Chemotherapy Response in Colorectal Cancer
Kreso, Antonija, O'Brien, Catherine A., van Galen, Peter, Gan, Olga I., Notta, Faiyaz, Brown, Andrew M. K., Ng, Karen, Ma, Jing, Wienholds, Erno, Dunant, Cyrille, Pollett, Aaron, Gallinger, Steven, McPherson, John, Mullighan, Charles G., Shibata, Darryl, Dick, John E.
Published in Science (American Association for the Advancement of Science) (01.02.2013)
Published in Science (American Association for the Advancement of Science) (01.02.2013)
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Self-renewal as a therapeutic target in human colorectal cancer
Kreso, Antonija, van Galen, Peter, Pedley, Nicholas M, Lima-Fernandes, Evelyne, Frelin, Catherine, Davis, Thomas, Cao, Liangxian, Baiazitov, Ramil, Du, Wu, Sydorenko, Nadiya, Moon, Young-Choon, Gibson, Lianne, Wang, Yadong, Leung, Cherry, Iscove, Norman N, Arrowsmith, Cheryl H, Szentgyorgyi, Eva, Gallinger, Steven, Dick, John E, O'Brien, Catherine A
Published in Nature medicine (01.01.2014)
Published in Nature medicine (01.01.2014)
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A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns
Notta, Faiyaz, Chan-Seng-Yue, Michelle, Lemire, Mathieu, Li, Yilong, Wilson, Gavin W., Connor, Ashton A., Denroche, Robert E., Liang, Sheng-Ben, Brown, Andrew M. K., Kim, Jaeseung C., Wang, Tao, Simpson, Jared T., Beck, Timothy, Borgida, Ayelet, Buchner, Nicholas, Chadwick, Dianne, Hafezi-Bakhtiari, Sara, Dick, John E., Heisler, Lawrence, Hollingsworth, Michael A., Ibrahimov, Emin, Jang, Gun Ho, Johns, Jeremy, Jorgensen, Lars G. T., Law, Calvin, Ludkovski, Olga, Lungu, Ilinca, Ng, Karen, Pasternack, Danielle, Petersen, Gloria M., Shlush, Liran I., Timms, Lee, Tsao, Ming-Sound, Wilson, Julie M., Yung, Christina K., Zogopoulos, George, Bartlett, John M. S., Alexandrov, Ludmil B., Real, Francisco X., Cleary, Sean P., Roehrl, Michael H., McPherson, John D., Stein, Lincoln D., Hudson, Thomas J., Campbell, Peter J., Gallinger, Steven
Published in Nature (London) (20.10.2016)
Published in Nature (London) (20.10.2016)
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Integration of Genomic and Transcriptional Features in Pancreatic Cancer Reveals Increased Cell Cycle Progression in Metastases
Connor, Ashton A., Denroche, Robert E., Jang, Gun Ho, Lemire, Mathieu, Zhang, Amy, Chan-Seng-Yue, Michelle, Wilson, Gavin, Grant, Robert C., Merico, Daniele, Lungu, Ilinca, Bartlett, John M.S., Chadwick, Dianne, Liang, Sheng-Ben, Eagles, Jenna, Mbabaali, Faridah, Miller, Jessica K., Krzyzanowski, Paul, Armstrong, Heather, Luo, Xuemei, Jorgensen, Lars G.T., Romero, Joan M., Bavi, Prashant, Fischer, Sandra E., Serra, Stefano, Hafezi-Bakhtiari, Sara, Caglar, Derin, Roehrl, Michael H.A., Cleary, Sean, Hollingsworth, Michael A., Petersen, Gloria M., Thayer, Sarah, Law, Calvin H.L., Nanji, Sulaiman, Golan, Talia, Smith, Alyssa L., Borgida, Ayelet, Dodd, Anna, Hedley, David, Wouters, Bradly G., O'Kane, Grainne M., Wilson, Julie M., Zogopoulos, George, Notta, Faiyaz, Knox, Jennifer J., Gallinger, Steven
Published in Cancer cell (11.02.2019)
Published in Cancer cell (11.02.2019)
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Prevalence and Penetrance of Major Genes and Polygenes for Colorectal Cancer
Win, Aung Ko, Jenkins, Mark A, Dowty, James G, Antoniou, Antonis C, Lee, Andrew, Giles, Graham G, Buchanan, Daniel D, Clendenning, Mark, Rosty, Christophe, Ahnen, Dennis J, Thibodeau, Stephen N, Casey, Graham, Gallinger, Steven, Le Marchand, Loïc, Haile, Robert W, Potter, John D, Zheng, Yingye, Lindor, Noralane M, Newcomb, Polly A, Hopper, John L, MacInnis, Robert J
Published in Cancer epidemiology, biomarkers & prevention (01.03.2017)
Published in Cancer epidemiology, biomarkers & prevention (01.03.2017)
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Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer
Klein, Alison P., Wolpin, Brian M., Risch, Harvey A., Stolzenberg-Solomon, Rachael Z., Mocci, Evelina, Canzian, Federico, Childs, Erica J., Jermusyk, Ashley, Albanes, Demetrius, Andreotti, Gabriella, Bamlet, William R., Berndt, Sonja I., Blackford, Amanda, Borges, Michael, Borgida, Ayelet, Bracci, Paige M., Brais, Lauren, Brennan, Paul, Brenner, Hermann, Bueno-de-Mesquita, Bas, Buring, Julie, Campa, Daniele, Capurso, Gabriele, Cavestro, Giulia Martina, Chaffee, Kari G., Chung, Charles C., Cotterchio, Michelle, Dijk, Frederike, Duell, Eric J., Foretova, Lenka, Fuchs, Charles, Funel, Niccola, Gallinger, Steven, M. Gaziano, J. Michael, Gazouli, Maria, Giles, Graham G., Giovannucci, Edward, Goggins, Michael, Goodman, Gary E., Goodman, Phyllis J., Haiman, Christopher, Hartge, Patricia, Hasan, Manal, Hegyi, Peter, Helzlsouer, Kathy J., Herman, Joseph, Holcatova, Ivana, Holly, Elizabeth A., Hoover, Robert, Hung, Rayjean J., Jacobs, Eric J., Janout, Vladimir, Kaaks, Rudolf, Khaw, Kay-Tee, Klein, Eric A., Kogevinas, Manolis, Kooperberg, Charles, Kulke, Matthew H., Kupcinskas, Juozas, Kurtz, Robert J., Laheru, Daniel, Landi, Stefano, Lawlor, Rita T., Lee, I.-Min, LeMarchand, Loic, Lu, Lingeng, Mannisto, Satu, Mohelníková-Duchoňová, Beatrice, Neale, Rachel E., Neoptolemos, John P., Oberg, Ann L., Olson, Sara H., Orlow, Irene, Pasquali, Claudio, Patel, Alpa V., Peters, Ulrike, Pezzilli, Raffaele, Porta, Miquel, Real, Francisco X., Rothman, Nathaniel, Scelo, Ghislaine, Sesso, Howard D., Severi, Gianluca, Shu, Xiao-Ou, Silverman, Debra, Smith, Jill P., Soucek, Pavel, Sund, Malin, Talar-Wojnarowska, Renata, Van Den Eeden, Stephen K., Visvanathan, Kala, Vodicka, Pavel, Wactawski-Wende, Jean, Wang, Zhaoming, Wentzensen, Nicolas, White, Emily, Zheng, Wei, Chanock, Stephen, Obazee, Ofure, Petersen, Gloria M.
Published in Nature communications (08.02.2018)
Published in Nature communications (08.02.2018)
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CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer
Ling, Hui, Spizzo, Riccardo, Atlasi, Yaser, Nicoloso, Milena, Shimizu, Masayoshi, Redis, Roxana S, Nishida, Naohiro, Gafà, Roberta, Song, Jian, Guo, Zhiyi, Ivan, Cristina, Barbarotto, Elisa, De Vries, Ingrid, Zhang, Xinna, Ferracin, Manuela, Churchman, Mike, van Galen, Janneke F, Beverloo, Berna H, Shariati, Maryam, Haderk, Franziska, Estecio, Marcos R, Garcia-Manero, Guillermo, Patijn, Gijs A, Gotley, David C, Bhardwaj, Vikas, Shureiqi, Imad, Sen, Subrata, Multani, Asha S, Welsh, James, Yamamoto, Ken, Taniguchi, Itsuki, Song, Min-Ae, Gallinger, Steven, Casey, Graham, Thibodeau, Stephen N, Le Marchand, Loïc, Tiirikainen, Maarit, Mani, Sendurai A, Zhang, Wei, Davuluri, Ramana V, Mimori, Koshi, Mori, Masaki, Sieuwerts, Anieta M, Martens, John W M, Tomlinson, Ian, Negrini, Massimo, Berindan-Neagoe, Ioana, Foekens, John A, Hamilton, Stanley R, Lanza, Giovanni, Kopetz, Scott, Fodde, Riccardo, Calin, George A
Published in Genome research (01.09.2013)
Published in Genome research (01.09.2013)
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Defective Mismatch Repair As a Predictive Marker for Lack of Efficacy of Fluorouracil-Based Adjuvant Therapy in Colon Cancer
SARGENT, Daniel J, MARSONI, Silvia, RIBIC, Christine, GROTHEY, Axel, MOORE, Malcolm, ZANIBONI, Alberto, SEITZ, Jean-Francois, SINICROPE, Frank, GALLINGER, Steven, MONGES, Genevieve, THIBODEAU, Stephen N, LABIANCA, Roberto, HAMILTON, Stanley R, FRENCH, Amy J, KABAT, Brian, FOSTER, Nathan R, TORRI, Valter
Published in Journal of clinical oncology (10.07.2010)
Published in Journal of clinical oncology (10.07.2010)
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Potential impact of family history–based screening guidelines on the detection of early‐onset colorectal cancer
Gupta, Samir, Bharti, Balambal, Ahnen, Dennis J., Buchanan, Daniel D., Cheng, Iona C., Cotterchio, Michelle, Figueiredo, Jane C., Gallinger, Steven J., Haile, Robert W., Jenkins, Mark A., Lindor, Noralane M., Macrae, Finlay A., Le Marchand, Loïc, Newcomb, Polly A., Thibodeau, Stephen N., Win, Aung Ko, Martinez, Maria Elena
Published in Cancer (01.07.2020)
Published in Cancer (01.07.2020)
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Improving prognostic performance in resectable pancreatic ductal adenocarcinoma using radiomics and deep learning features fusion in CT images
Zhang, Yucheng, Lobo-Mueller, Edrise M., Karanicolas, Paul, Gallinger, Steven, Haider, Masoom A., Khalvati, Farzad
Published in Scientific reports (14.01.2021)
Published in Scientific reports (14.01.2021)
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Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers
Shlien, Adam, Campbell, Brittany B, de Borja, Richard, Alexandrov, Ludmil B, Merico, Daniele, Wedge, David, Van Loo, Peter, Tarpey, Patrick S, Coupland, Paul, Behjati, Sam, Pollett, Aaron, Lipman, Tatiana, Heidari, Abolfazl, Deshmukh, Shriya, Avitzur, Na'ama, Meier, Bettina, Gerstung, Moritz, Hong, Ye, Merino, Diana M, Ramakrishna, Manasa, Remke, Marc, Arnold, Roland, Panigrahi, Gagan B, Thakkar, Neha P, Hodel, Karl P, Henninger, Erin E, Göksenin, A Yasemin, Bakry, Doua, Charames, George S, Druker, Harriet, Lerner-Ellis, Jordan, Mistry, Matthew, Dvir, Rina, Grant, Ronald, Elhasid, Ronit, Farah, Roula, Taylor, Glenn P, Nathan, Paul C, Alexander, Sarah, Ben-Shachar, Shay, Ling, Simon C, Gallinger, Steven, Constantini, Shlomi, Dirks, Peter, Huang, Annie, Scherer, Stephen W, Grundy, Richard G, Durno, Carol, Aronson, Melyssa, Gartner, Anton, Meyn, M Stephen, Taylor, Michael D, Pursell, Zachary F, Pearson, Christopher E, Malkin, David, Futreal, P Andrew, Stratton, Michael R, Bouffet, Eric, Hawkins, Cynthia, Campbell, Peter J, Tabori, Uri
Published in Nature genetics (01.03.2015)
Published in Nature genetics (01.03.2015)
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Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer
Wolpin, Brian M, Rizzato, Cosmeri, Kooperberg, Charles, Petersen, Gloria M, Wang, Zhaoming, Arslan, Alan A, Beane-Freeman, Laura, Bracci, Paige M, Buring, Julie, Canzian, Federico, Duell, Eric J, Gallinger, Steven, Giles, Graham G, Goodman, Gary E, Goodman, Phyllis J, Kamineni, Aruna, Klein, Alison P, Kulke, Matthew H, Li, Donghui, Malats, Núria, Olson, Sara H, Sesso, Howard D, Visvanathan, Kala, White, Emily, Zheng, Wei, Abnet, Christian C, Albanes, Demetrius, Andreotti, Gabriella, Austin, Melissa A, Barfield, Richard, Basso, Daniela, Berndt, Sonja I, Boutron-Ruault, Marie-Christine, Brotzman, Michelle, Bueno-de-Mesquita, H Bas, Bugert, Peter, Burdette, Laurie, Campa, Daniele, Caporaso, Neil E, Chung, Charles, Cotterchio, Michelle, Costello, Eithne, Elena, Joanne, Funel, Niccola, Giese, Nathalia A, Giovannucci, Edward L, Goggins, Michael, Gorman, Megan J, Gross, Myron, Haiman, Christopher A, Hassan, Manal, Helzlsouer, Kathy J, Holly, Elizabeth A, Hu, Nan, Hunter, David J, Innocenti, Federico, Jenab, Mazda, Kaaks, Rudolf, Key, Timothy J, Klein, Eric A, Krogh, Vittorio, Kupcinskas, Juozas, Kurtz, Robert C, LaCroix, Andrea, Landi, Maria T, Landi, Stefano, Le Marchand, Loic, Mannisto, Satu, Milne, Roger L, Nakamura, Yusuke, Oberg, Ann L, Owzar, Kouros, Patel, Alpa V, Peeters, Petra H M, Pezzilli, Raffaele, Piepoli, Ada, Porta, Miquel, Real, Francisco X, Rothman, Nathaniel, Scarpa, Aldo, Shu, Xiao-Ou, Silverman, Debra T, Soucek, Pavel, Sund, Malin, Talar-Wojnarowska, Renata, Taylor, Philip R, Theodoropoulos, George E, Thornquist, Mark, Tjønneland, Anne, Tobias, Geoffrey S, Vodicka, Pavel, Wactawski-Wende, Jean, Wentzensen, Nicolas, Wu, Chen, Yu, Herbert, Yu, Kai, Zeleniuch-Jacquotte, Anne, Hoover, Robert, Fuchs, Charles, Amundadottir, Laufey T
Published in Nature genetics (01.09.2014)
Published in Nature genetics (01.09.2014)
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Genomic Features and Classification of Homologous Recombination Deficient Pancreatic Ductal Adenocarcinoma
Golan, Talia, O’Kane, Grainne M., Denroche, Robert E., Raitses-Gurevich, Maria, Grant, Robert C., Holter, Spring, Wang, Yifan, Zhang, Amy, Jang, Gun Ho, Stossel, Chani, Atias, Dikla, Halperin, Sharon, Berger, Raanan, Glick, Yulia, Park, J. Patrick, Cuggia, Adeline, Williamson, Laura, Wong, Hui-Li, Schaeffer, David F., Renouf, Daniel J., Borgida, Ayelet, Dodd, Anna, Wilson, Julie M., Fischer, Sandra E., Notta, Faiyaz, Knox, Jennifer J., Zogopoulos, George, Gallinger, Steven
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2021)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2021)
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