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Burr, Marian L., Sparbier, Christina E., Chan, Kah Lok, Chan, Yih-Chih, Kersbergen, Ariena, Lam, Enid Y.N., Azidis-Yates, Elizabeth, Vassiliadis, Dane, Bell, Charles C., Gilan, Omer, Jackson, Susan, Tan, Lavinia, Wong, Stephen Q., Hollizeck, Sebastian, Michalak, Ewa M., Siddle, Hannah V., McCabe, Michael T., Prinjha, Rab K., Guerra, Glen R., Solomon, Benjamin J., Sandhu, Shahneen, Dawson, Sarah-Jane, Beavis, Paul A., Tothill, Richard W., Cullinane, Carleen, Lehner, Paul J., Sutherland, Kate D., Dawson, Mark A.
Published in Cancer cell (14.10.2019)
Published in Cancer cell (14.10.2019)
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RET Solvent Front Mutations Mediate Acquired Resistance to Selective RET Inhibition in RET-Driven Malignancies
Solomon, Benjamin J., Tan, Lavinia, Lin, Jessica J., Wong, Stephen Q., Hollizeck, Sebastian, Ebata, Kevin, Tuch, Brian B., Yoda, Satoshi, Gainor, Justin F., Sequist, Lecia V., Oxnard, Geoffrey R., Gautschi, Oliver, Drilon, Alexander, Subbiah, Vivek, Khoo, Christine, Zhu, Edward Y., Nguyen, Michele, Henry, Dahlia, Condroski, Kevin R., Kolakowski, Gabrielle R., Gomez, Eliana, Ballard, Joshua, Metcalf, Andrew T., Blake, James F., Dawson, Sarah-Jane, Blosser, Wayne, Stancato, Louis F., Brandhuber, Barbara J., Andrews, Steve, Robinson, Bruce G., Rothenberg, S. Michael
Published in Journal of thoracic oncology (01.04.2020)
Published in Journal of thoracic oncology (01.04.2020)
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Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates
Do, Hongdo, Wong, Stephen Q, Li, Jason, Dobrovic, Alexander
Published in Clinical chemistry (Baltimore, Md.) (01.09.2013)
Published in Clinical chemistry (Baltimore, Md.) (01.09.2013)
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UV-Associated Mutations Underlie the Etiology of MCV-Negative Merkel Cell Carcinomas
Wong, Stephen Q, Waldeck, Kelly, Vergara, Ismael A, Schröder, Jan, Madore, Jason, Wilmott, James S, Colebatch, Andrew J, De Paoli-Iseppi, Ricardo, Li, Jason, Lupat, Richard, Semple, Timothy, Arnau, Gisela Mir, Fellowes, Andrew, Leonard, J Helen, Hruby, George, Mann, Graham J, Thompson, John F, Cullinane, Carleen, Johnston, Meredith, Shackleton, Mark, Sandhu, Shahneen, Bowtell, David D L, Johnstone, Ricky W, Fox, Stephen B, McArthur, Grant A, Papenfuss, Anthony T, Scolyer, Richard A, Gill, Anthony J, Hicks, Rodney J, Tothill, Richard W
Published in Cancer research (Chicago, Ill.) (15.12.2015)
Published in Cancer research (Chicago, Ill.) (15.12.2015)
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Detection of cell-free microbial DNA using a contaminant-controlled analysis framework
Zozaya-Valdés, Enrique, Wong, Stephen Q, Raleigh, Jeanette, Hatzimihalis, Athena, Ftouni, Sarah, Papenfuss, Anthony T, Sandhu, Shahneen, Dawson, Mark A, Dawson, Sarah-Jane
Published in Genome Biology (23.06.2021)
Published in Genome Biology (23.06.2021)
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The landscape of cell-free mitochondrial DNA in liquid biopsy for cancer detection
van der Pol, Ymke, Moldovan, Norbert, Ramaker, Jip, Bootsma, Sanne, Lenos, Kristiaan J., Vermeulen, Louis, Sandhu, Shahneen, Bahce, Idris, Pegtel, D. Michiel, Wong, Stephen Q., Dawson, Sarah-Jane, Chandrananda, Dineika, Mouliere, Florent
Published in Genome Biology (12.10.2023)
Published in Genome Biology (12.10.2023)
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A Phase II trial of alternating osimertinib and gefitinib therapy in advanced EGFR-T790M positive non-small cell lung cancer: OSCILLATE
Tan, Lavinia, Brown, Chris, Mersiades, Antony, Lee, Chee Khoon, John, Thomas, Kao, Steven, Newnham, Genni, O'Byrne, Kenneth, Parakh, Sagun, Bray, Victoria, Jasas, Kevin, Yip, Sonia, Wong, Stephen Q, Ftouni, Sarah, Guinto, Jerick, Chandrashekar, Sushma, Clarke, Stephen, Pavlakis, Nick, Stockler, Martin R, Dawson, Sarah-Jane, Solomon, Benjamin J
Published in Nature communications (28.02.2024)
Published in Nature communications (28.02.2024)
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Molecular disease monitoring using circulating tumor DNA in myelodysplastic syndromes
Yeh, Paul, Dickinson, Michael, Ftouni, Sarah, Hunter, Tane, Sinha, Devbarna, Wong, Stephen Q., Agarwal, Rishu, Vedururu, Ravikiran, Doig, Kenneth, Fong, Chun Yew, Blombery, Piers, Westerman, David, Dawson, Mark A., Dawson, Sarah-Jane
Published in Blood (23.03.2017)
Published in Blood (23.03.2017)
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Circulating tumour DNA reflects treatment response and clonal evolution in chronic lymphocytic leukaemia
Yeh, Paul, Hunter, Tane, Sinha, Devbarna, Ftouni, Sarah, Wallach, Elise, Jiang, Damian, Chan, Yih-Chih, Wong, Stephen Q, Silva, Maria Joao, Vedururu, Ravikiran, Doig, Kenneth, Lam, Enid, Arnau, Gisela Mir, Semple, Timothy, Wall, Meaghan, Zivanovic, Andjelija, Agarwal, Rishu, Petrone, Pasquale, Jones, Kate, Westerman, David, Blombery, Piers, Seymour, John F, Papenfuss, Anthony T, Dawson, Mark A, Tam, Constantine S, Dawson, Sarah-Jane
Published in Nature communications (17.03.2017)
Published in Nature communications (17.03.2017)
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Circulating tumour DNA in metastatic breast cancer to guide clinical trial enrolment and precision oncology: A cohort study
Zivanovic Bujak, Andjelija, Weng, Chen-Fang, Silva, Maria João, Yeung, Miriam, Lo, Louisa, Ftouni, Sarah, Litchfield, Cassandra, Ko, Yi-An, Kuykhoven, Keilly, Van Geelen, Courtney, Chandrashekar, Sushma, Dawson, Mark A, Loi, Sherene, Wong, Stephen Q, Dawson, Sarah-Jane
Published in PLoS medicine (01.10.2020)
Published in PLoS medicine (01.10.2020)
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Multiplexed transcriptome analysis to detect ALK, ROS1 and RET rearrangements in lung cancer
Rogers, Toni-Maree, Arnau, Gisela Mir, Ryland, Georgina L, Huang, Stephen, Lira, Maruja E, Emmanuel, Yvette, Perez, Omar D, Irwin, Darryl, Fellowes, Andrew P, Wong, Stephen Q, Fox, Stephen B
Published in Scientific reports (09.02.2017)
Published in Scientific reports (09.02.2017)
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Low-coverage whole-genome sequencing of extracellular vesicle-associated DNA in patients with metastatic cancer
Nguyen, Bella, Wong, Nicholas C, Semple, Tim, Clark, Michael, Wong, Stephen Q, Leslie, Connull, Mirzai, Bob, Millward, Michael, Meehan, Katie, Lim, Annette M
Published in Scientific reports (17.02.2021)
Published in Scientific reports (17.02.2021)
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Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma
Faridi, Pouya, Woods, Katherine, Ostrouska, Simone, Deceneux, Cyril, Aranha, Ritchlynn, Duscharla, Divya, Wong, Stephen Q, Chen, Weisan, Ramarathinam, Sri H, Lim Kam Sian, Terry C C, Croft, Nathan P, Li, Chen, Ayala, Rochelle, Cebon, Jonathan S, Purcell, Anthony W, Schittenhelm, Ralf B, Behren, Andreas
Published in Cancer immunology research (01.10.2020)
Published in Cancer immunology research (01.10.2020)
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TERT structural rearrangements in metastatic pheochromocytomas
Dwight, Trisha, Flynn, Aidan, Amarasinghe, Kaushalya, Benn, Diana E, Lupat, Richard, Li, Jason, Cameron, Daniel L, Hogg, Annette, Balachander, Shiva, Candiloro, Ida L M, Wong, Stephen Q, Robinson, Bruce G, Papenfuss, Anthony T, Gill, Anthony J, Dobrovic, Alexander, Hicks, Rodney J, Clifton-Bligh, Roderick J, Tothill, Richard W
Published in Endocrine-related cancer (01.01.2018)
Published in Endocrine-related cancer (01.01.2018)
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Author Correction: Low-coverage whole-genome sequencing of extracellular vesicle-associated DNA in patients with metastatic cancer
Nguyen, Bella, Wong, Nicholas C., Semple, Tim, Clark, Michael, Wong, Stephen Q., Leslie, Connull, Mirzai, Bob, Millward, Michael, Meehan, Katie, Lim, Annette M.
Published in Scientific reports (27.07.2021)
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Role of p53 in the progression of gastric cancer
Busuttil, Rita A, Zapparoli, Giada V, Haupt, Sue, Fennell, Christina, Wong, Stephen Q, Pang, Jia-Min B, Takeno, Elena A, Mitchell, Catherine, Di Costanzo, Natasha, Fox, Stephen, Haupt, Ygal, Dobrovic, Alexander, Boussioutas, Alex
Published in Oncotarget (15.12.2014)
Published in Oncotarget (15.12.2014)
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Detection of BRAF mutations in patients with hairy cell leukemia and related lymphoproliferative disorders
BLOMBERY, Piers A, WONG, Stephen Q, HEWITT, Chelsee A, DOBROVIC, Alexander, MAXWELL, Ellen L, JUNEJA, Surender, GRIGORIADIS, George, WESTERMAN, David A
Published in Haematologica (Roma) (01.05.2012)
Published in Haematologica (Roma) (01.05.2012)
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Identification of single nucleotide variants using position-specific error estimation in deep sequencing data
Kleftogiannis, Dimitrios, Punta, Marco, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q, Gasi Tandefelt, Delila, Conteduca, Vincenza, Wetterskog, Daniel, Attard, Gerhardt, Lise, Stefano
Published in BMC medical genomics (02.08.2019)
Published in BMC medical genomics (02.08.2019)
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Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue
Kader, Tanjina, Goode, David L, Wong, Stephen Q, Connaughton, Jacquie, Rowley, Simone M, Devereux, Lisa, Byrne, David, Fox, Stephen B, Mir Arnau, Gisela, Tothill, Richard W, Campbell, Ian G, Gorringe, Kylie L
Published in Genome medicine (15.11.2016)
Published in Genome medicine (15.11.2016)
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Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment
Li, Jason, Doyle, Maria A, Saeed, Isaam, Wong, Stephen Q, Mar, Victoria, Goode, David L, Caramia, Franco, Doig, Ken, Ryland, Georgina L, Thompson, Ella R, Hunter, Sally M, Halgamuge, Saman K, Ellul, Jason, Dobrovic, Alexander, Campbell, Ian G, Papenfuss, Anthony T, McArthur, Grant A, Tothill, Richard W
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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