CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Ounit, Rachid, Wanamaker, Steve, Close, Timothy J, Lonardi, Stefano
Published in BMC genomics (25.03.2015)
Published in BMC genomics (25.03.2015)
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Composition Profiler: a tool for discovery and visualization of amino acid composition differences
Vacic, Vladimir, Uversky, Vladimir N, Dunker, A Keith, Lonardi, Stefano
Published in BMC bioinformatics (19.06.2007)
Published in BMC bioinformatics (19.06.2007)
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Journal Article
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
McIntyre, Alexa B R, Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J, Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S, Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A, Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R, Rosen, Gail L, Mason, Christopher E
Published in Genome Biology (21.09.2017)
Published in Genome Biology (21.09.2017)
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Journal Article
Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph
Wu, Yonghui, Bhat, Prasanna R, Close, Timothy J, Lonardi, Stefano
Published in PLoS genetics (01.10.2008)
Published in PLoS genetics (01.10.2008)
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Journal Article
A multi‐parent advanced generation inter‐cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.)
Huynh, Bao‐Lam, Ehlers, Jeffrey D., Huang, Bevan Emma, Muñoz‐Amatriaín, María, Lonardi, Stefano, Santos, Jansen R. P., Ndeve, Arsenio, Batieno, Benoit J., Boukar, Ousmane, Cisse, Ndiaga, Drabo, Issa, Fatokun, Christian, Kusi, Francis, Agyare, Richard Y., Guo, Yi‐Ning, Herniter, Ira, Lo, Sassoum, Wanamaker, Steve I., Xu, Shizhong, Close, Timothy J., Roberts, Philip A.
Published in The Plant journal : for cell and molecular biology (01.03.2018)
Published in The Plant journal : for cell and molecular biology (01.03.2018)
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Journal Article
Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival
Bogunovic, Dusan, O'Neill, David W, Belitskaya-Levy, Ilana, Vacic, Vladimir, Yu, Yi-Lo, Adams, Sylvia, Darvishian, Farbod, Berman, Russell, Shapiro, Richard, Pavlick, Anna C, Lonardi, Stefano, Zavadil, Jiri, Osman, Iman, Bhardwaj, Nina
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2009)
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Karyotype variation, spontaneous genome rearrangements affecting chemical insensitivity, and expression level polymorphisms in the plant pathogen Phytophthora infestans revealed using its first chromosome-scale assembly
Matson, Michael E. H, Liang, Qihua, Lonardi, Stefano, Judelson, Howard S
Published in PLoS pathogens (10.10.2022)
Published in PLoS pathogens (10.10.2022)
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Journal Article
Experiencing SAX: a novel symbolic representation of time series
Lin, Jessica, Keogh, Eamonn, Wei, Li, Lonardi, Stefano
Published in Data mining and knowledge discovery (01.10.2007)
Published in Data mining and knowledge discovery (01.10.2007)
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Journal Article
Seed Coat Pattern QTL and Development in Cowpea (Vigna unguiculata [L.] Walp.)
Herniter, Ira A., Lo, Ryan, Muñoz-Amatriaín, María, Lo, Sassoum, Guo, Yi-Ning, Huynh, Bao-Lam, Lucas, Mitchell, Jia, Zhenyu, Roberts, Philip A., Lonardi, Stefano, Close, Timothy J.
Published in Frontiers in plant science (25.10.2019)
Published in Frontiers in plant science (25.10.2019)
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Journal Article
Corrigendum: Seed coat pattern QTL and development in cowpea (Vigna unguiculata [L.] Walp.)
Herniter, Ira A., Lo, Ryan, Muñoz-Amatriaín, María, Lo, Sassoum, Guo, Yi-Ning, Huynh, Bao-Lam, Lucas, Mitchell, Jia, Zhenyu, Roberts, Philip A., Lonardi, Stefano, Close, Timothy J.
Published in Frontiers in plant science (01.11.2023)
Published in Frontiers in plant science (01.11.2023)
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Journal Article
Nucleosome landscape and control of transcription in the human malaria parasite
Ponts, Nadia, Harris, Elena Y, Prudhomme, Jacques, Wick, Ivan, Eckhardt-Ludka, Colleen, Hicks, Glenn R, Hardiman, Gary, Lonardi, Stefano, Le Roch, Karine G
Published in Genome research (01.02.2010)
Published in Genome research (01.02.2010)
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Mechanisms of Small RNA Generation from Cis-NATs in Response to Environmental and Developmental Cues
Zhang, Xiaoming, Lii, Yifan, Wu, Zhigang, Polishko, Anton, Zhang, Huiming, Chinnusamy, Viswanathan, Lonardi, Stefano, Zhu, Jian-Kang, Liu, Renyi, Jin, Hailing
Published in Molecular plant (01.05.2013)
Published in Molecular plant (01.05.2013)
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Journal Article
FHAST: FPGA-Based Acceleration of Bowtie in Hardware
Fernandez, Edward B., Villarreal, Jason, Lonardi, Stefano, Najjar, Walid A.
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2015)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2015)
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Journal Article
Generating and Reversing Chronic Wounds in Diabetic Mice by Manipulating Wound Redox Parameters
Martins-Green, Manuela, Schiller, Neal, Lonardi, Stefano, Lyubovitsky, Julia, Mirebrahim, Seyed H., Kim, Jane, Garcia, Monika, Do, Danh C., Dhall, Sandeep, Nothnagel, Eugene A.
Published in Journal of Diabetes Research (01.01.2014)
Published in Journal of Diabetes Research (01.01.2014)
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