TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction
Doyle, Erin L, Booher, Nicholas J, Standage, Daniel S, Voytas, Daniel F, Brendel, Volker P, Vandyk, John K, Bogdanove, Adam J
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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Journal Article
Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect
Standage, Daniel S., Berens, Ali J., Glastad, Karl M., Severin, Andrew J., Brendel, Volker P., Toth, Amy L.
Published in Molecular ecology (01.04.2016)
Published in Molecular ecology (01.04.2016)
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Journal Article
iLoci: robust evaluation of genome content and organization for provisional and mature genome assemblies
Standage, Daniel S, Lai, Tim, Brendel, Volker P
Published in NAR genomics and bioinformatics (13.01.2022)
Published in NAR genomics and bioinformatics (13.01.2022)
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Journal Article
xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud
Duvick, Jon, Standage, Daniel S., Merchant, Nirav, Brendel, Volker P.
Published in The Plant cell (01.04.2016)
Published in The Plant cell (01.04.2016)
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Journal Article
The khmer software package: enabling efficient nucleotide sequence analysis [version 1; peer review: 2 approved, 1 approved with reservations]
Crusoe, Michael R, Alameldin, Hussien F, Awad, Sherine, Boucher, Elmar, Caldwell, Adam, Cartwright, Reed, Charbonneau, Amanda, Constantinides, Bede, Edvenson, Greg, Fay, Scott, Fenton, Jacob, Fenzl, Thomas, Fish, Jordan, Garcia-Gutierrez, Leonor, Garland, Phillip, Gluck, Jonathan, González, Iván, Guermond, Sarah, Guo, Jiarong, Gupta, Aditi, Herr, Joshua R, Howe, Adina, Hyer, Alex, Härpfer, Andreas, Irber, Luiz, Kidd, Rhys, Lin, David, Lippi, Justin, Mansour, Tamer, McA'Nulty, Pamela, McDonald, Eric, Mizzi, Jessica, Murray, Kevin D, Nahum, Joshua R, Nanlohy, Kaben, Nederbragt, Alexander Johan, Ortiz-Zuazaga, Humberto, Ory, Jeramia, Pell, Jason, Pepe-Ranney, Charles, Russ, Zachary N, Schwarz, Erich, Scott, Camille, Seaman, Josiah, Sievert, Scott, Simpson, Jared, Skennerton, Connor T, Spencer, James, Srinivasan, Ramakrishnan, Standage, Daniel, Stapleton, James A, Steinman, Susan R, Stein, Joe, Taylor, Benjamin, Trimble, Will, Wiencko, Heather L, Wright, Michael, Wyss, Brian, Zhang, Qingpeng, zyme, en, Brown, C. Titus
Published in F1000 research (2015)
Published in F1000 research (2015)
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sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets
Irber, Luiz, Pierce-Ward, N. Tessa, Abuelanin, Mohamed, Alexander, Harriet, Anant, Abhishek, Barve, Keya, Baumler, Colton, Botvinnik, Olga, Brooks, Phillip, Dsouza, Daniel, Gautier, Laurent, Hera, Mahmudur Rahman, Houts, Hannah Eve, Johnson, Lisa K., Klötzl, Fabian, Koslicki, David, Lim, Marisa, Lim, Ricky, Nelson, Bradley, Ogasawara, Ivan, Reiter, Taylor, Scott, Camille, Sjödin, Andreas, Standage, Daniel, Swamidass, S. Joshua, Tiffany, Connor, Vemuri, Pranathi, Young, Erik, Brown, C. Titus
Published in Journal of open source software (28.06.2024)
Published in Journal of open source software (28.06.2024)
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Journal Article
khmer release v2.1: software for biological sequence analysis
Standage, Daniel, yari, Ali, J. Cohen, Lisa, R. Crusoe, Michael, Head, Tim, Irber, Luiz, EK Joslin, Shannon, B. Kingsley, N., D. Murray, Kevin, Neches, Russell, Scott, Camille, Shean, Ryan, Steinbiss, Sascha, Sydney, Cait, Titus Brown, C.
Published in Journal of open source software (03.07.2017)
Published in Journal of open source software (03.07.2017)
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