CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants
Chen, Chaoran, Nadeau, Sarah, Yared, Michael, Voinov, Philippe, Xie, Ning, Roemer, Cornelius, Stadler, Tanja
Published in Bioinformatics (04.03.2022)
Published in Bioinformatics (04.03.2022)
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Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration
Gavryushkina, Alexandra, Welch, David, Stadler, Tanja, Drummond, Alexei J
Published in PLoS computational biology (01.12.2014)
Published in PLoS computational biology (01.12.2014)
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Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2
Huisman, Jana S, Scire, Jérémie, Angst, Daniel C, Li, Jinzhou, Neher, Richard A, Maathuis, Marloes H, Bonhoeffer, Sebastian, Stadler, Tanja
Published in eLife (08.08.2022)
Published in eLife (08.08.2022)
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Practical considerations for measuring the effective reproductive number, Rt
Gostic, Katelyn M, McGough, Lauren, Baskerville, Edward B, Abbott, Sam, Joshi, Keya, Tedijanto, Christine, Kahn, Rebecca, Niehus, Rene, Hay, James A, De Salazar, Pablo M, Hellewell, Joel, Meakin, Sophie, Munday, James D, Bosse, Nikos I, Sherrat, Katharine, Thompson, Robin N, White, Laura F, Huisman, Jana S, Scire, Jérémie, Bonhoeffer, Sebastian, Stadler, Tanja, Wallinga, Jacco, Funk, Sebastian, Lipsitch, Marc, Cobey, Sarah
Published in PLoS computational biology (10.12.2020)
Published in PLoS computational biology (10.12.2020)
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Wastewater-Based Estimation of the Effective Reproductive Number of SARS-CoV-2
Huisman, Jana S, Scire, Jérémie, Caduff, Lea, Fernandez-Cassi, Xavier, Ganesanandamoorthy, Pravin, Kull, Anina, Scheidegger, Andreas, Stachler, Elyse, Boehm, Alexandria B, Hughes, Bridgette, Knudson, Alisha, Topol, Aaron, Wigginton, Krista R, Wolfe, Marlene K, Kohn, Tamar, Ort, Christoph, Stadler, Tanja, Julian, Timothy R
Published in Environmental health perspectives (01.05.2022)
Published in Environmental health perspectives (01.05.2022)
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Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo
Benz, Fabienne, Huisman, Jana S., Bakkeren, Erik, Herter, Joana A., Stadler, Tanja, Ackermann, Martin, Diard, Médéric, Egli, Adrian, Hall, Alex R., Hardt, Wolf-Dietrich, Bonhoeffer, Sebastian
Published in The ISME Journal (01.03.2021)
Published in The ISME Journal (01.03.2021)
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LAPIS is a fast web API for massive open virus sequencing data
Chen, Chaoran, Taepper, Alexander, Engelniederhammer, Fabian, Kellerer, Jonas, Roemer, Cornelius, Stadler, Tanja
Published in BMC bioinformatics (05.06.2023)
Published in BMC bioinformatics (05.06.2023)
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HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa
Windels, Etthel M, Wampande, Eddie M, Joloba, Moses L, Boom, W Henry, Goig, Galo A, Cox, Helen, Hella, Jerry, Borrell, Sonia, Gagneux, Sebastien, Brites, Daniela, Stadler, Tanja
Published in PLoS pathogens (01.05.2024)
Published in PLoS pathogens (01.05.2024)
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