Mammalian ISWI and SWI/SNF selectively mediate binding of distinct transcription factors
Barisic, Darko, Stadler, Michael B., Iurlaro, Mario, Schübeler, Dirk
Published in Nature (London) (01.05.2019)
Published in Nature (London) (01.05.2019)
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Self-organization and symmetry breaking in intestinal organoid development
Serra, Denise, Mayr, Urs, Boni, Andrea, Lukonin, Ilya, Rempfler, Markus, Challet Meylan, Ludivine, Stadler, Michael B., Strnad, Petr, Papasaikas, Panagiotis, Vischi, Dario, Waldt, Annick, Roma, Guglielmo, Liberali, Prisca
Published in Nature (London) (01.05.2019)
Published in Nature (London) (01.05.2019)
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QuasR: quantification and annotation of short reads in R
Gaidatzis, Dimos, Lerch, Anita, Hahne, Florian, Stadler, Michael B
Published in Bioinformatics (01.04.2015)
Published in Bioinformatics (01.04.2015)
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Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
Cowan, Cameron S., Renner, Magdalena, De Gennaro, Martina, Gross-Scherf, Brigitte, Goldblum, David, Hou, Yanyan, Munz, Martin, Rodrigues, Tiago M., Krol, Jacek, Szikra, Tamas, Cuttat, Rachel, Waldt, Annick, Papasaikas, Panagiotis, Diggelmann, Roland, Patino-Alvarez, Claudia P., Galliker, Patricia, Spirig, Stefan E., Pavlinic, Dinko, Gerber-Hollbach, Nadine, Schuierer, Sven, Srdanovic, Aldin, Balogh, Marton, Panero, Riccardo, Kusnyerik, Akos, Szabo, Arnold, Stadler, Michael B., Orgül, Selim, Picelli, Simone, Hasler, Pascal W., Hierlemann, Andreas, Scholl, Hendrik P.N., Roma, Guglielmo, Nigsch, Florian, Roska, Botond
Published in Cell (17.09.2020)
Published in Cell (17.09.2020)
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Aging-Dependent Demethylation of Regulatory Elements Correlates with Chromatin State and Improved β Cell Function
Avrahami, Dana, Li, Changhong, Zhang, Jia, Schug, Jonathan, Avrahami, Ran, Rao, Shilpa, Stadler, Michael B., Burger, Lukas, Schübeler, Dirk, Glaser, Benjamin, Kaestner, Klaus H.
Published in Cell metabolism (06.10.2015)
Published in Cell metabolism (06.10.2015)
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Identification of active regulatory regions from DNA methylation data
Burger, Lukas, Gaidatzis, Dimos, Schübeler, Dirk, Stadler, Michael B
Published in Nucleic acids research (01.09.2013)
Published in Nucleic acids research (01.09.2013)
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The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells
Horvathova, Ivana, Voigt, Franka, Kotrys, Anna V., Zhan, Yinxiu, Artus-Revel, Caroline G., Eglinger, Jan, Stadler, Michael B., Giorgetti, Luca, Chao, Jeffrey A.
Published in Molecular cell (02.11.2017)
Published in Molecular cell (02.11.2017)
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Gene bivalency at Polycomb domains regulates cranial neural crest positional identity
Minoux, Maryline, Holwerda, Sjoerd, Vitobello, Antonio, Kitazawa, Taro, Kohler, Hubertus, Stadler, Michael B., Rijli, Filippo M.
Published in Science (American Association for the Advancement of Science) (31.03.2017)
Published in Science (American Association for the Advancement of Science) (31.03.2017)
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DNA-binding factors shape the mouse methylome at distal regulatory regions
Stadler, Michael B., Murr, Rabih, Burger, Lukas, Ivanek, Robert, Lienert, Florian, Schöler, Anne, Nimwegen, Erik van, Wirbelauer, Christiane, Oakeley, Edward J., Gaidatzis, Dimos, Tiwari, Vijay K., Schübeler, Dirk
Published in Nature (London) (22.12.2011)
Published in Nature (London) (22.12.2011)
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Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
Soneson, Charlotte, Srivastava, Avi, Patro, Rob, Stadler, Michael B
Published in PLoS computational biology (11.01.2021)
Published in PLoS computational biology (11.01.2021)
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Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
Beisel, Christian, Oakeley, Edward J, Roloff, Tim C, Stadler, Michael B, Brykczynska, Urszula, Erkek, Serap, Ramos, Liliana, Peters, Antoine H F M, Schübeler, Dirk, Hisano, Mizue
Published in Nature structural & molecular biology (01.06.2010)
Published in Nature structural & molecular biology (01.06.2010)
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Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors
Mohn, Fabio, Weber, Michael, Rebhan, Michael, Roloff, Tim C., Richter, Jens, Stadler, Michael B., Bibel, Miriam, Schübeler, Dirk
Published in Molecular cell (20.06.2008)
Published in Molecular cell (20.06.2008)
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Transcriptional code and disease map for adult retinal cell types
Siegert, Sandra, Cabuy, Erik, Scherf, Brigitte Gross, Kohler, Hubertus, Panda, Satchidananda, Le, Yun-Zheng, Fehling, Hans Jörg, Gaidatzis, Dimos, Stadler, Michael B, Roska, Botond
Published in Nature neuroscience (01.03.2012)
Published in Nature neuroscience (01.03.2012)
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Characterizing Light-Regulated Retinal MicroRNAs Reveals Rapid Turnover as a Common Property of Neuronal MicroRNAs
Krol, Jacek, Busskamp, Volker, Markiewicz, Ilona, Stadler, Michael B., Ribi, Sebastian, Richter, Jens, Duebel, Jens, Bicker, Silvia, Fehling, Hans Jörg, Schübeler, Dirk, Oertner, Thomas G., Schratt, Gerhard, Bibel, Miriam, Roska, Botond, Filipowicz, Witold
Published in Cell (14.05.2010)
Published in Cell (14.05.2010)
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A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest
Kessler, Sandra, Minoux, Maryline, Joshi, Onkar, Ben Zouari, Yousra, Ducret, Sebastien, Ross, Fiona, Vilain, Nathalie, Salvi, Adwait, Wolff, Joachim, Kohler, Hubertus, Stadler, Michael B., Rijli, Filippo M.
Published in Nature communications (05.06.2023)
Published in Nature communications (05.06.2023)
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Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop
Aceto, Nicola, Sausgruber, Nina, Brinkhaus, Heike, Gaidatzis, Dimos, Martiny-Baron, Georg, Mazzarol, Giovanni, Confalonieri, Stefano, Quarto, Micaela, Hu, Guang, Balwierz, Piotr J, Pachkov, Mikhail, Elledge, Stephen J, van Nimwegen, Erik, Stadler, Michael B, Bentires-Alj, Mohamed
Published in Nature medicine (01.04.2012)
Published in Nature medicine (01.04.2012)
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