Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing
Hotaling, Scott, Sproul, John S, Heckenhauer, Jacqueline, Powell, Ashlyn, Larracuente, Amanda M, Pauls, Steffen U, Kelley, Joanna L, Frandsen, Paul B
Published in Genome biology and evolution (03.08.2021)
Published in Genome biology and evolution (03.08.2021)
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Journal Article
Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing
Kanda, Kojun, Pflug, James M, Sproul, John S, Dasenko, Mark A, Maddison, David R
Published in PloS one (30.12.2015)
Published in PloS one (30.12.2015)
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Journal Article
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera)
Olsen, Lindsey K, Heckenhauer, Jacqueline, Sproul, John S, Dikow, Rebecca B, Gonzalez, Vanessa L, Kweskin, Matthew P, Taylor, Adam M, Wilson, Seth B, Stewart, Russell J, Zhou, Xin, Holzenthal, Ralph, Pauls, Steffen U, Frandsen, Paul B
Published in Genome biology and evolution (01.03.2021)
Published in Genome biology and evolution (01.03.2021)
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Journal Article
Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization
Gustafson, Grey T., Alexander, Alana, Sproul, John S., Pflug, James M., Maddison, David R., Short, Andrew E. Z.
Published in Ecology and evolution (01.06.2019)
Published in Ecology and evolution (01.06.2019)
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Journal Article
Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America
Sproul, John S, Houston, Derek D, Nelson, C Riley, Evans, R Paul, Crandall, Keith A, Shiozawa, Dennis K
Published in BMC evolutionary biology (12.12.2015)
Published in BMC evolutionary biology (12.12.2015)
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Journal Article
RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles
Negm, Sherif, Greenberg, Anya, Larracuente, Amanda M., Sproul, John S.
Published in Molecular ecology resources (01.04.2021)
Published in Molecular ecology resources (01.04.2021)
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Journal Article
Pathways to polar adaptation in fishes revealed by long‐read sequencing
Hotaling, Scott, Desvignes, Thomas, Sproul, John S., Lins, Luana S. F., Kelley, Joanna L.
Published in Molecular ecology (01.03.2023)
Published in Molecular ecology (01.03.2023)
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Journal Article
Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges
Sproul, John S., Hotaling, Scott, Heckenhauer, Jacqueline, Powell, Ashlyn, Marshall, Dez, Larracuente, Amanda M., Kelley, Joanna L., Pauls, Steffen U., Frandsen, Paul B.
Published in Genome research (01.10.2023)
Published in Genome research (01.10.2023)
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Journal Article
Dynamic Evolution of Euchromatic Satellites on the X Chromosome in Drosophila melanogaster and the simulans Clade
Sproul, John S, Khost, Danielle E, Eickbush, Danna G, Negm, Sherif, Wei, Xiaolu, Wong, Isaac, Larracuente, Amanda M
Published in Molecular biology and evolution (01.08.2020)
Published in Molecular biology and evolution (01.08.2020)
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Journal Article
Cryptic species in the mountaintops: species delimitation and taxonomy of the Bembidion breve species group (Coleoptera: Carabidae) aided by genomic architecture of a century-old type specimen
Sproul, John S, Maddison, David R
Published in Zoological journal of the Linnean Society (01.07.2018)
Published in Zoological journal of the Linnean Society (01.07.2018)
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Journal Article
Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot “Djulis” (Chenopodium formosanum)
Jarvis, David E, Sproul, John S, Navarro-Domínguez, Beatriz, Krak, Karol, Jaggi, Kate, Huang, Yung-Fen, Huang, Tzu-Yun, Lin, Tzu Che, Jellen, Eric N, Maughan, Peter J
Published in Genome biology and evolution (03.08.2022)
Published in Genome biology and evolution (03.08.2022)
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Journal Article
Genome size evolution in the diverse insect order Trichoptera
Heckenhauer, Jacqueline, Frandsen, Paul B, Sproul, John S, Li, Zheng, Paule, Juraj, Larracuente, Amanda M, Maughan, Peter J, Barker, Michael S, Schneider, Julio V, Stewart, Russell J, Pauls, Steffen U
Published in Gigascience (25.02.2022)
Published in Gigascience (25.02.2022)
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Journal Article
Comparative phylogeography of codistributed aquatic insects in western North America: insights into dispersal and regional patterns of genetic structure
Sproul, John S, Houston, Derek. D, Davis, Nicholas, Barrington, Emily, Oh, Sun Yeong, Evans, R. Paul, Shiozawa, Dennis K
Published in Freshwater biology (01.10.2014)
Published in Freshwater biology (01.10.2014)
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Journal Article
Comparative phylogeography of codistributed aquatic insects in western N orth A merica: insights into dispersal and regional patterns of genetic structure
Sproul, John S., Houston, Derek. D., Davis, Nicholas, Barrington, Emily, Oh, Sun Yeong, Evans, R. Paul, Shiozawa, Dennis K.
Published in Freshwater biology (01.10.2014)
Published in Freshwater biology (01.10.2014)
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Journal Article