Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals
Spadar, Anton, Perdigão, João, Phelan, Jody, Charleston, James, Modesto, Ana, Elias, Rita, de Sessions, Paola Florez, Hibberd, Martin L., Campino, Susana, Duarte, Aida, Clark, Taane G.
Published in Scientific reports (22.03.2021)
Published in Scientific reports (22.03.2021)
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Journal Article
Identification of two insecticide resistance markers in Ethiopian Anopheles stephensi mosquitoes using a multiplex amplicon sequencing assay
Acford-Palmer, Holly, Phelan, Jody E., Tadesse, Fitsum G., Kristan, Mojca, Collins, Emma, Spadar, Anton, Walker, Thomas, Bousema, Teun, Messenger, Louisa A., Clark, Taane G., Campino, Susana
Published in Scientific reports (05.04.2023)
Published in Scientific reports (05.04.2023)
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Journal Article
High-throughput barcoding method for the genetic surveillance of insecticide resistance and species identification in Anopheles gambiae complex malaria vectors
Campos, Monica, Phelan, Jody, Spadar, Anton, Collins, Emma, Gonçalves, Adéritow, Pelloquin, Bethanie, Vaselli, Natasha Marcella, Meiwald, Anne, Clark, Emma, Stica, Caleb, Orsborne, James, Sylla, Moussa, Edi, Constant, Camara, Denka, Mohammed, Abdul Rahim, Afrane, Yaw Asare, Kristan, Mojca, Walker, Thomas, Gomez, Lara Ferrero, Messenger, Louisa A., Clark, Taane G., Campino, Susana
Published in Scientific reports (16.08.2022)
Published in Scientific reports (16.08.2022)
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Journal Article
Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data
Spadar, Anton, Phelan, Jody E, Clark, Taane G, Campino, Susana
Published in Parasites & vectors (05.08.2023)
Published in Parasites & vectors (05.08.2023)
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Journal Article
A next generation targeted amplicon sequencing method to screen for insecticide resistance mutations in Aedes aegypti populations reveals a rdl mutation in mosquitoes from Cabo Verde
Collins, Emma L, Phelan, Jody E, Hubner, Magdalena, Spadar, Anton, Campos, Monica, Ward, Daniel, Acford-Palmer, Holly, Gomes, Ana Rita, Silva, Keily, Ferrero Gomez, Lara, Clark, Taane G, Campino, Susana
Published in PLoS neglected tropical diseases (13.12.2022)
Published in PLoS neglected tropical diseases (13.12.2022)
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Journal Article
Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations
Turkiewicz, Anna, Manko, Emilia, Oresegun, Damiola R., Nolder, Debbie, Spadar, Anton, Sutherland, Colin J., Cox-Singh, Janet, Moon, Robert W., Lau, Yee-Ling, Campino, Susana, Clark, Taane G.
Published in Scientific reports (07.02.2023)
Published in Scientific reports (07.02.2023)
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Journal Article
A next generation targeted amplicon sequencing method to screen for insecticide resistance mutations in Aedes aegypti populations reveals a rdl mutation in mosquitoes from Cabo Verde
Emma L. Collins, Jody E. Phelan, Magdalena Hubner, Anton Spadar, Monica Campos, Daniel Ward, Holly Acford-Palmer, Ana Rita Gomes, Keily Silva, Lara Ferrero Gomez, Taane G. Clark, Susana Campino
Published in PLoS neglected tropical diseases (01.12.2022)
Published in PLoS neglected tropical diseases (01.12.2022)
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Journal Article
Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance
Spadar, Anton, Phelan, Jody, Elias, Rita, Modesto, Ana, Caneiras, Cátia, Marques, Cátia, Lito, Luís, Pinto, Margarida, Cavaco-Silva, Patrícia, Ferreira, Helena, Pomba, Constança, Da Silva, Gabriela J., Saavedra, Maria José, Melo-Cristino, José, Duarte, Aida, Campino, Susana, Perdigão, João, Clark, Taane G.
Published in Scientific reports (13.08.2022)
Published in Scientific reports (13.08.2022)
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Journal Article
Genome-wide genetic variation and molecular surveillance of drug resistance in Plasmodium falciparum isolates from asymptomatic individuals in Ouélessébougou, Mali
Vanheer, Leen N., Mahamar, Almahamoudou, Manko, Emilia, Niambele, Sidi M., Sanogo, Koualy, Youssouf, Ahamadou, Dembele, Adama, Diallo, Makonon, Maguiraga, Seydina O., Phelan, Jody, Osborne, Ashley, Spadar, Anton, Smit, Merel J., Bousema, Teun, Drakeley, Chris, Clark, Taane G., Stone, William, Dicko, Alassane, Campino, Susana
Published in Scientific reports (12.06.2023)
Published in Scientific reports (12.06.2023)
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Journal Article
Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus
Spadar, Anton, Phelan, Jody E, Benavente, Ernest Diez, Campos, Monica, Gomez, Lara Ferrero, Mohareb, Fady, Clark, Taane G, Campino, Susana
Published in Parasites & vectors (26.06.2021)
Published in Parasites & vectors (26.06.2021)
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Journal Article
Genomic Epidemiology of Carbapenemase Producing Klebsiella pneumoniae Strains at a Northern Portuguese Hospital Enables the Detection of a Misidentified Klebsiella variicola KPC-3 Producing Strain
Perdigão, João, Caneiras, Cátia, Elias, Rita, Modesto, Ana, Spadar, Anton, Phelan, Jody, Campino, Susana, Clark, Taane G, Costa, Eliana, Saavedra, Maria José, Duarte, Aida
Published in Microorganisms (Basel) (13.12.2020)
Published in Microorganisms (Basel) (13.12.2020)
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Journal Article
Emergence of KPC-3- and OXA-181-producing ST13 and ST17 Klebsiella pneumoniae in Portugal: genomic insights on national and international dissemination
Elias, Rita, Spadar, Anton, Hendrickx, Antoni P A, Bonnin, Remy A, Dortet, Laurent, Pinto, Margarida, Phelan, Jody E, Portugal, Isabel, Campino, Susana, da Silva, Gabriela Jorge, Clark, Taane G, Duarte, Aida, Perdigão, João
Published in Journal of antimicrobial chemotherapy (03.05.2023)
Published in Journal of antimicrobial chemotherapy (03.05.2023)
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Journal Article
Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana
Mills, Richael O, Dadzie, Isaac, Le-Viet, Thanh, Baker, David J, Addy, Humphrey P K, Akwetey, Samuel A, Donkoh, Irene E, Quansah, Elvis, Semanshia, Prince S, Morgan, Jennifer, Mensah, Abraham, Adade, Nana E, Ampah, Emmanuel O, Owusu, Emmanuel, Mwintige, Philimon, Amoako, Eric O, Spadar, Anton, Holt, Kathryn E, Foster-Nyarko, Ebenezer
Published in Journal of antimicrobial chemotherapy (01.07.2024)
Published in Journal of antimicrobial chemotherapy (01.07.2024)
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A phylogenomic approach for the analysis of colistin resistance-associated genes in Klebsiella pneumoniae, its mutational diversity and implications for phenotypic resistance
Elias, Rita, Spadar, Anton, Phelan, Jody, Melo-Cristino, José, Lito, Luís, Pinto, Margarida, Gonçalves, Luísa, Campino, Susana, Clark, Taane G., Duarte, Aida, Perdigão, João
Published in International journal of antimicrobial agents (01.06.2022)
Published in International journal of antimicrobial agents (01.06.2022)
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Journal Article
Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital
Perdigão, João, Modesto, Ana, Pereira, A L, Neto, O, Matos, V, Godinho, A, Phelan, Jody, Charleston, James, Spadar, Anton, de Sessions, Paola Florez, Hibberd, Martin, Campino, Susana, Costa, A, Fernandes, F, Ferreira, F, Correia, A B, Gonçalves, Luisa, Clark, Taane G, Duarte, Aida
Published in Microbial genomics (01.09.2019)
Published in Microbial genomics (01.09.2019)
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Journal Article
Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana
Mills, Richael O, Dadzie, Isaac, Le-Viet, Thanh, Baker, David J, Addy, Humphrey P K, Akwetey, Samuel A, Donkoh, Irene E, Quansah, Elvis, Semanshia, Prince S, Morgan, Jennifer, Mensah, Abraham, Adade, Nana E, Ampah, Emmanuel O, Owusu, Emmanuel, Mwintige, Philimon, Amoako, Eric O, Spadar, Anton, Holt, Kathryn E, Foster-Nyarko, Ebenezer
Published in bioRxiv (22.01.2024)
Published in bioRxiv (22.01.2024)
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